pycom11g15510

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0028738
Physical Location & Seq
Reverse (-)
16253057 .. 16254400
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1344 bp
ATGTTGAGAACAAGAAGAGTGGGTCCAGTAATTAAACTGGAGCCTCAAGAAGGAGTGGATCCGAGAGTACTACGGCAGAAAGAGCTAAACAGAAAATTTGTGAGTTTCTCCAAGAGGCGTTATGGGCTGTTTAGCAAGGCTACGGATTTTTGCTTGAAGTTCGACGCACAAATTGCCATTCTAGTGTTGTCTCCTGCTGGTAGGCCTTACTCTTTTGGACACTCGTCTGTGGATGCCGTTCTCAATCGCTATTTTAGGATAGCGCAAGCACCTTCTACCAGCGGGGTTAAGGTAGAGCAAATGCCTTCAAGTAGCAGCATTAAAATAGAGGAATTAGCGTCTTGTTCTAGTAGCGGTGTACTTACAGTAGATGATCAGCAGCAAAGAGACAAGATTCAAGAGCTCAGAAACCAACTTGAAAATCAAAAGAAGCGAAAGAGAGAGAACGAGATTGCGGAGAAGGAGAAGGTGGCGAAGGTGAAAGAGTCGATTGAGAAGGAGTTGCAAACAAGCAAAATAGTTGAAGAGTTGGTGGCATTTAAACAAAAATATTCGGTGCTTCTTGACAATATTAACAAGAGATTGAAAAAATCGCTCATTAATAAGAGGCAATGTGTGTCGATCAAACCACAACTGAAATCTGAAGATCACTTGTGGTCTAATTCAAGTACCCTAAATTTTGAGACTGGTCATCGTGCAGTGGTTGATCATGAGCATCCTCATTACAACAATTGTTCTTTTCAAGACGTCGTTAACAGGCAATGCGTCTCAATCAAACCAATTGTTAAATCTGAAAACATATCGCCGCCTAGTTCAACCATAAATTTTGAGATTGATCATCACTGTCATGGTAACAACGGTGGTGGCGAGGGATCTATCAGCCAGGATAAATTTTTGGAAGATAATAACGCGCAACGTGTCTCGATCAGACCACTTTTGATATCTGAAGACACACAGCTTAATACAACCCTAACAAGGGTGGCTGATGATCATCATGTTAGTAACGGCAATGGACCTTTCACCTGGAATGCAGAAGATTTGGAGAACTTCCTGCTAAGGCAAGATTTGGAGGATATAGGTGGTGCAGTGGATCAAACTCGATATTCTGCAATGCTCAACTACTTTAAAGGGGAAGATGGTAATGATCTGAACGGCGCCATTGATGTTTCACCTACAGAACATGTTGCTTTCCGTGCTACGAGCACTCCCTTCGATCCAGTTGGGTCAACAGATTTCACACAACACAATACTGCTGATCGTGCTGCTAATAGATATTCCGGCTACTTAGAAGACATAATCCATAATCCTTACTCTCATCAGCATACACGTTTCTATTTTAGTTGA

Protein Analysis

448

Amino Acids

50.62

Weight (kDa)

6.98

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 30 - 72 1.9e-12 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028738)

Species Orthologous Gene IDs
malus_domestica MD00G1031800.v1.1
pyrus_communis pycom11g15510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 750
AccB1I GGYRCC 1 cut(s) 1154
AccII CGCG 1 cut(s) 911
AciI CCGC 4 cut(s) 282, 354, 455, 806
AclWI GGATC 5 cut(s) 53, 66, 880, 1098, 1208
AcsI RAATTY 4 cut(s) 95, 676, 823, 890
AcuI CTGAAG 2 cut(s) 663, 966
AcyI GRCGYC 2 cut(s) 747, 1155
AfaI GTAC 3 cut(s) 69, 360, 670
AfiI CCNNNNNNNGG 3 cut(s) 50, 975, 976
AflIII ACRYGT 3 cut(s) 916, 1180, 1325
AgsI TTSAA 9 cut(s) 157, 309, 398, 419, 524, 586, 666, 743, 816
AjnI CCWGG 2 cut(s) 882, 1022
AluBI AGCT 3 cut(s) 85, 403, 958
AluI AGCT 3 cut(s) 85, 403, 958
Alw21I GWGCWC 2 cut(s) 405, 1205
Alw26I GTCTC 5 cut(s) 195, 381, 677, 772, 925
AlwI GGATC 5 cut(s) 53, 66, 880, 1098, 1208
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 3 cut(s) 315, 379, 1262
ApoI RAATTY 4 cut(s) 95, 676, 823, 890
AseI ATTAAT 1 cut(s) 600
AspLEI GCGC 3 cut(s) 265, 913, 1157
AspS9I GGNCC 2 cut(s) 23, 1013
AsuHPI GGTGA 3 cut(s) 490, 1012, 1161
AvaII GGWCC 2 cut(s) 23, 1013
BamHI GGATCC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 1154
BanII GRGCYC 1 cut(s) 405
BbsI GAAGAC 2 cut(s) 954, 1296
Bbv12I GWGCWC 2 cut(s) 405, 1205
BbvI GCAGC 3 cut(s) 327, 391, 1249
BccI CCATC 1 cut(s) 1130
BceAI ACGGC 4 cut(s) 89, 221, 1021, 1168
BcgI CGANNNNNNTGC 2 cut(s) 1192, 1226
BciT130I CCWGG 2 cut(s) 884, 1024
BclI TGATCA 4 cut(s) 373, 706, 835, 988
BcoDI GTCTC 5 cut(s) 195, 381, 677, 772, 925
BfaI CTAG 3 cut(s) 182, 348, 810
BfmI CTRYAG 1 cut(s) 1173
BfoI RGCGCY 1 cut(s) 1158
BisI GCNGC 4 cut(s) 316, 380, 806, 1263
BlsI GCNGC 4 cut(s) 317, 381, 807, 1264
BmcAI AGTACT 1 cut(s) 69
Bme1390I CCNGG 2 cut(s) 884, 1024
Bme18I GGWCC 2 cut(s) 23, 1013
BmgT120I GGNCC 2 cut(s) 23, 1013
BmiI GGNNCC 4 cut(s) 24, 42, 60, 1156
BmrFI CCNGG 2 cut(s) 884, 1024
BmsI GCATC 2 cut(s) 223, 724
BoxI GACNNNNGTC 1 cut(s) 223
BpiI GAAGAC 2 cut(s) 954, 1296
BpmI CTGGAG 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 1055
BpuEI CTTGAG 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 990
BsaHI GRCGYC 2 cut(s) 747, 1155
BsaXI ACNNNNNCTCC 2 cut(s) 1189, 1219
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 975, 976
Bse1I ACTGG 4 cut(s) 26, 42, 691, 1217
Bse3DI GCAATG 4 cut(s) 617, 767, 1015, 1116
Bse8I GATNNNNATC 1 cut(s) 990
BseBI CCWGG 2 cut(s) 884, 1024
BseGI GGATG 2 cut(s) 238, 715
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 3 cut(s) 50, 975, 976
BseMI GCAATG 4 cut(s) 617, 767, 1015, 1116
BseMII CTCAG 1 cut(s) 418
BseNI ACTGG 4 cut(s) 26, 42, 691, 1217
BseXI GCAGC 3 cut(s) 327, 391, 1249
BsgI GTGCAG 2 cut(s) 717, 1104
Bsh1236I CGCG 1 cut(s) 911
BshFI GGCC 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 1154
BsiHKAI GWGCWC 2 cut(s) 405, 1205
BsiSI CCGG 1 cut(s) 1278
BslI CCNNNNNNNGG 3 cut(s) 50, 975, 976
BsmAI GTCTC 5 cut(s) 195, 381, 677, 772, 925
BsmBI CGTCTC 1 cut(s) 772
BsmI GAATGC 1 cut(s) 1033
BsnI GGCC 1 cut(s) 205
Bsp1286I GDGCHC 2 cut(s) 405, 1205
BspACI CCGC 4 cut(s) 282, 354, 455, 806
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 417
BspFNI CGCG 1 cut(s) 911
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 4 cut(s) 24, 42, 60, 1156
BspPI GGATC 5 cut(s) 53, 66, 880, 1098, 1208
BspT107I GGYRCC 1 cut(s) 1154
BsrDI GCAATG 4 cut(s) 617, 767, 1015, 1116
BsrI ACTGG 4 cut(s) 26, 42, 691, 1217
BssNI GRCGYC 2 cut(s) 747, 1155
Bst2UI CCWGG 2 cut(s) 884, 1024
Bst4CI ACNGT 3 cut(s) 367, 845, 860
Bst6I CTCTTC 2 cut(s) 10, 519
BstACI GRCGYC 2 cut(s) 747, 1155
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 3 cut(s) 404, 1055, 1285
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 238, 715
BstFNI CGCG 1 cut(s) 911
BstH2I RGCGCY 1 cut(s) 1158
BstHHI GCGC 3 cut(s) 265, 913, 1157
BstMAI GTCTC 5 cut(s) 195, 381, 677, 772, 925
BstMWI GCNNNNNNNGC 5 cut(s) 82, 124, 173, 1193, 1259
BstNI CCWGG 2 cut(s) 884, 1024
BstNSI RCATGY 1 cut(s) 1184
BstPAI GACNNNNGTC 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 882, 1022
BstSFI CTRYAG 1 cut(s) 1173
BstUI CGCG 1 cut(s) 911
BstV1I GCAGC 3 cut(s) 327, 391, 1249
BstV2I GAAGAC 2 cut(s) 954, 1296
BstX2I RGATCY 2 cut(s) 58, 872
BstYI RGATCY 2 cut(s) 58, 872
BsuRI GGCC 1 cut(s) 205
BtsCI GGATG 2 cut(s) 238, 715
BtsI GCAGTG 2 cut(s) 705, 1092
BtsIMutI CAGTG 3 cut(s) 705, 841, 1092
Cac8I GCNNGC 1 cut(s) 267
CciI TCATGA 1 cut(s) 709
CfoI GCGC 3 cut(s) 265, 913, 1157
Cfr13I GGNCC 2 cut(s) 23, 1013
CseI GACGC 3 cut(s) 173, 327, 754
Csp6I GTAC 3 cut(s) 68, 359, 669
CspCI CAANNNNNGTGG 3 cut(s) 35, 844, 879
CviAII CATG 4 cut(s) 710, 848, 995, 1181
CviQI GTAC 3 cut(s) 68, 359, 669
DdeI CTNAG 3 cut(s) 404, 1055, 1285
DinI GGCGCC 1 cut(s) 1156
DraI TTTAAA 2 cut(s) 541, 1126
Eam1104I CTCTTC 2 cut(s) 10, 519
EarI CTCTTC 2 cut(s) 10, 519
Ecl136II GAGCTC 1 cut(s) 403
Eco147I AGGCCT 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 405
Eco32I GATATC 1 cut(s) 942
Eco47I GGWCC 2 cut(s) 23, 1013
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 2 cut(s) 663, 966
EcoICRI GAGCTC 1 cut(s) 403
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoRII CCWGG 2 cut(s) 882, 1022
EcoRV GATATC 1 cut(s) 942
EcoT38I GRGCYC 1 cut(s) 405
EgeI GGCGCC 1 cut(s) 1156
EheI GGCGCC 1 cut(s) 1156
Esp3I CGTCTC 1 cut(s) 772
FaeI CATG 4 cut(s) 713, 851, 998, 1184
FatI CATG 4 cut(s) 709, 847, 994, 1180
FauI CCCGC 1 cut(s) 275
FbaI TGATCA 4 cut(s) 373, 706, 835, 988
Fnu4HI GCNGC 4 cut(s) 316, 380, 806, 1263
FokI GGATG 2 cut(s) 245, 702
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 4 cut(s) 316, 380, 806, 1263
FspBI CTAG 3 cut(s) 182, 348, 810
GlaI GCGC 3 cut(s) 264, 912, 1156
GluI GCNGC 4 cut(s) 316, 380, 806, 1263
GsuI CTGGAG 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 1158
HaeIII GGCC 1 cut(s) 205
HapII CCGG 1 cut(s) 1278
HgaI GACGC 3 cut(s) 173, 327, 754
HhaI GCGC 3 cut(s) 265, 913, 1157
Hin1I GRCGYC 2 cut(s) 747, 1155
Hin1II CATG 4 cut(s) 713, 851, 998, 1184
Hin6I GCGC 3 cut(s) 263, 911, 1155
HinP1I GCGC 3 cut(s) 263, 911, 1155
HincII GTYRAC 2 cut(s) 754, 1227
HindII GTYRAC 2 cut(s) 754, 1227
HinfI GANTC 2 cut(s) 394, 485
HpaI GTTAAC 1 cut(s) 754
HpaII CCGG 1 cut(s) 1278
HphI GGTGA 3 cut(s) 490, 1012, 1161
Hpy166II GTNNAC 3 cut(s) 359, 754, 1227
Hpy188I TCNGA 7 cut(s) 63, 407, 643, 793, 929, 946, 1149
Hpy188III TCNNGA 6 cut(s) 47, 398, 563, 710, 743, 922
Hpy8I GTNNAC 3 cut(s) 359, 754, 1227
Hpy99I CGWCG 2 cut(s) 167, 752
HpyAV CCTTC 8 cut(s) 44, 282, 315, 454, 460, 469, 490, 1219
HpyCH4III ACNGT 3 cut(s) 367, 845, 860
HpyCH4IV ACGT 3 cut(s) 747, 916, 1327
HpyCH4V TGCA 5 cut(s) 505, 698, 1031, 1085, 1109
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 124, 173, 1193, 1259
HpyF3I CTNAG 3 cut(s) 404, 1055, 1285
HpySE526I ACGT 3 cut(s) 747, 916, 1327
Hsp92I GRCGYC 2 cut(s) 747, 1155
Hsp92II CATG 4 cut(s) 713, 851, 998, 1184
HspAI GCGC 3 cut(s) 263, 911, 1155
KasI GGCGCC 1 cut(s) 1154
Ksp22I TGATCA 4 cut(s) 373, 706, 835, 988
KspAI GTTAAC 1 cut(s) 754
LmnI GCTCC 1 cut(s) 40
Lsp1109I GCAGC 3 cut(s) 327, 391, 1249
LweI GCATC 2 cut(s) 223, 724
MaeI CTAG 3 cut(s) 182, 348, 810
MaeII ACGT 3 cut(s) 747, 916, 1327
MaeIII GTNAC 2 cut(s) 851, 1001
MboII GAAGA 8 cut(s) 27, 536, 656, 911, 959, 1046, 1145, 1301
MfeI CAATTG 2 cut(s) 730, 780
MflI RGATCY 2 cut(s) 58, 872
MhlI GDGCHC 2 cut(s) 405, 1205
Mly113I GGCGCC 1 cut(s) 1155
MlyI GAGTC 1 cut(s) 494
MnlI CCTC 7 cut(s) 54, 108, 322, 600, 729, 862, 1063
MslI CAYNNNNRTG 2 cut(s) 182, 846
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 1 cut(s) 1278
MspR9I CCNGG 2 cut(s) 884, 1024
MunI CAATTG 2 cut(s) 730, 780
Mva1269I GAATGC 1 cut(s) 1033
MvaI CCWGG 2 cut(s) 884, 1024
MvnI CGCG 1 cut(s) 911
MwoI GCNNNNNNNGC 5 cut(s) 82, 124, 173, 1193, 1259
NarI GGCGCC 1 cut(s) 1155
NlaIII CATG 4 cut(s) 713, 851, 998, 1184
NlaIV GGNNCC 4 cut(s) 24, 42, 60, 1156
NspI RCATGY 1 cut(s) 1184
PagI TCATGA 1 cut(s) 709
PceI AGGCCT 1 cut(s) 205
PciI ACATGT 1 cut(s) 1180
PcsI WCGNNNNNNNCGW 1 cut(s) 864
PctI GAATGC 1 cut(s) 1033
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 4 cut(s) 317, 381, 807, 1264
PleI GAGTC 1 cut(s) 493
PluTI GGCGCC 1 cut(s) 1158
PpsI GAGTC 1 cut(s) 493
PscI ACATGT 1 cut(s) 1180
PshAI GACNNNNGTC 1 cut(s) 223
PshBI ATTAAT 1 cut(s) 600
Psp124BI GAGCTC 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 882, 1022
PspGI CCWGG 2 cut(s) 882, 1022
PspN4I GGNNCC 4 cut(s) 24, 42, 60, 1156
PspPI GGNCC 2 cut(s) 23, 1013
PsuI RGATCY 2 cut(s) 58, 872
RsaI GTAC 3 cut(s) 69, 360, 670
RsaNI GTAC 3 cut(s) 68, 359, 669
RseI CAYNNNNRTG 2 cut(s) 182, 846
SacI GAGCTC 1 cut(s) 405
SatI GCNGC 4 cut(s) 316, 380, 806, 1263
Sau96I GGNCC 2 cut(s) 23, 1013
ScaI AGTACT 1 cut(s) 69
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 2 cut(s) 884, 1024
SduI GDGCHC 2 cut(s) 405, 1205
SfaNI GCATC 2 cut(s) 223, 724
SfcI CTRYAG 1 cut(s) 1173
SfoI GGCGCC 1 cut(s) 1156
SinI GGWCC 2 cut(s) 23, 1013
SmiMI CAYNNNNRTG 2 cut(s) 182, 846
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 4 cut(s) 282, 354, 455, 806
SspDI GGCGCC 1 cut(s) 1154
SspI AATATT 2 cut(s) 551, 571
SspMI CTAG 3 cut(s) 182, 348, 810
SstI GAGCTC 1 cut(s) 405
StuI AGGCCT 1 cut(s) 205
StyD4I CCNGG 2 cut(s) 882, 1022
TaaI ACNGT 3 cut(s) 367, 845, 860
TaiI ACGT 3 cut(s) 750, 919, 1330
TaqI TCGA 6 cut(s) 162, 488, 620, 923, 1099, 1212
TatI WGTACW 2 cut(s) 67, 358
TauI GCSGC 1 cut(s) 808
TfiI GAWTC 1 cut(s) 394
TscAI CASTG 3 cut(s) 705, 848, 1092
TseI GCWGC 3 cut(s) 315, 379, 1262
TspGWI ACGGA 2 cut(s) 158, 1181
TspRI CASTG 3 cut(s) 705, 848, 1092
VpaK11BI GGWCC 2 cut(s) 23, 1013
VspI ATTAAT 1 cut(s) 600
XagI CCTNNNNNAGG 1 cut(s) 48
XapI RAATTY 4 cut(s) 95, 676, 823, 890
XceI RCATGY 1 cut(s) 1184
XspI CTAG 3 cut(s) 182, 348, 810
ZraI GACGTC 1 cut(s) 748
ZrmI AGTACT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.