Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0028910

Physical Location & Seq

Genomic Coordinates Forward (+)

20182787 .. 20184082

Gene Structure 1296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAATCTATATCAGAGTAGAACTGGGAGGACAACTACGTTACTACATAGATGTCCTCGCATGCTCCACCAAGAACCTGACAGAAACCCTAAGGGTCATCCAGCAGCTTGTAGTTCAGCAATTCATAGCCTCTGCAACGGTATCACCTTAACTGAAAATGTCATACGGCCAGAATGCGTTCAAAATCTCACCCCTCCCAGATACCAGAAAACGCAGTTTGTTTCGTTGCAACAATTAAATCAGGCATTACTTTCTGTTCCTGCAGACAGCATGTATGATTACCAGCACACCTGGGATCCAATCTCAGATTCTGGAAGACAAATCCTAAGACCTGGTTTTGATTTGGCCTGGGACCTCCTATCAGATGATGACTTCCCAACCCGGAGAACACAATATCCACAAGTGACGAGCCTGACAAAGTTGATCGATCAACTCCTTTTTGGTGGAATCGCCAAGGGGGTTGAAGCGGTTTTGCAGAGGCTGAAGATCATTGAGCAAGAAATCAGAGACTTGAAACAGGAGATCCAAGGACTGAGATATTGCGAGCATAGACTACTTGCTGAGCTTCATCTGCCGAATATGTTCTACTTTGTTAGAACAGAAAATTACTCGAGGAGATTGATCGATACCAACATGGTTCCCGGCATGAATGCTATTCGACAGCACACGTTGTGCGAATTTCAACGAGAAATGCATGTCATTGAAGATCAAATGGGGTGTGAACTGATGCAGGTTGACAGCAGGACCGTGAAGTCTTTGGCACCCTACACCACAAAGTTCATGAAACTGCTAACATTTAATCTCAAGATAGGAGCCCATCTAGCAGCTGGCATGGGAGAAATGATACCGGATTTGAGCAGGGAACTTGCCCACCTGGCCGATTCATCCCTCCTTGATGGAGCCGCAGGTGCAGGGGCAGTTGCTGCCGGTGCAGTGGAGGCTGCAGCAATTGGGCATGGAAGGAGCAGAAGCAAAGCTGCAGAAAGCTCAAGAGATATCCAGCAAGACGAGAGAACCGCACAACAATGGGTTCTGGATTTCCTAAGGGAACGGAGATGCTCAACCAGAAAGGATATCGCTGAGAAGTTCAGGTTATGGAGAGTGAGATACAGAGACGATAGTCAGATTGCACGGATCTGCAGGAGGCATATTAACCTCAGAGCACATGAAATAATTGAAGTGCCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009914 GO:0009926 GO:0009933 GO:0009956 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010305 GO:0010540 GO:0010817 GO:0016049 GO:0032501 GO:0032502 GO:0040007 GO:0048366 GO:0048367 GO:0048507 GO:0048532 GO:0048731 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COR LRR_6 Roc

Protein Analysis

397

Amino Acids

45.26

Weight (kDa)

8.53

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028910)

Species	Orthologous Gene IDs
malus_domestica	MD11G1205800.v1.1
pyrus_communis	pycom11g17850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	896
AasI	GACNNNNNNGTC	1 cut(s)	751
Acc36I	ACCTGC	2 cut(s)	721, 896
AccB1I	GGYRCC	1 cut(s)	760
AciI	CCGC	3 cut(s)	467, 903, 1017
AclWI	GGATC	4 cut(s)	290, 303, 517, 1142
AcoI	YGGCCR	2 cut(s)	167, 876
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	503
AdeI	CACNNNGTG	1 cut(s)	672
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	6 cut(s)	182, 464, 514, 683, 704, 1178
AjnI	CCWGG	4 cut(s)	290, 331, 347, 873
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AloI	GAACNNNNNNTCC	2 cut(s)	379, 411
AluBI	AGCT	5 cut(s)	107, 565, 827, 977, 987
AluI	AGCT	5 cut(s)	107, 565, 827, 977, 987
Alw21I	GWGCWC	1 cut(s)	1165
Alw26I	GTCTC	2 cut(s)	501, 1107
AlwI	GGATC	4 cut(s)	290, 303, 517, 1142
AlwNI	CAGNNNCTG	3 cut(s)	311, 481, 923
Ama87I	CYCGRG	1 cut(s)	610
AoxI	GGCC	3 cut(s)	167, 345, 876
ApeKI	GCWGC	6 cut(s)	104, 824, 923, 941, 944, 977
ApoI	RAATTY	1 cut(s)	677
Asp700I	GAANNNNTTC	2 cut(s)	177, 581
AspS9I	GGNCC	2 cut(s)	352, 744
AsuC2I	CCSGG	2 cut(s)	382, 642
AsuHPI	GGTGA	2 cut(s)	136, 181
AvaI	CYCGRG	1 cut(s)	610
AvaII	GGWCC	2 cut(s)	352, 744
AxyI	CCTNAGG	2 cut(s)	90, 1043
BamHI	GGATCC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	760
BanII	GRGCYC	1 cut(s)	817
BbsI	GAAGAC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	1165
BbvI	GCAGC	6 cut(s)	116, 836, 910, 928, 956, 964
BccI	CCATC	2 cut(s)	825, 890
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	4 cut(s)	292, 333, 349, 875
BcnI	CCSGG	2 cut(s)	382, 642
BcoDI	GTCTC	2 cut(s)	501, 1107
BfaI	CTAG	1 cut(s)	821
BfmI	CTRYAG	4 cut(s)	261, 942, 978, 1138
BfuAI	ACCTGC	2 cut(s)	721, 896
BglI	GCCNNNNNGGC	1 cut(s)	875
BisI	GCNGC	7 cut(s)	105, 825, 903, 924, 942, 945, 978
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	7 cut(s)	106, 826, 904, 925, 943, 946, 979
Bme1390I	CCNGG	6 cut(s)	292, 333, 349, 382, 642, 875
Bme18I	GGWCC	2 cut(s)	352, 744
BmeT110I	CYCGRG	1 cut(s)	610
BmgT120I	GGNCC	2 cut(s)	352, 744
BmiI	GGNNCC	6 cut(s)	297, 353, 639, 762, 814, 901
BmrFI	CCNGG	6 cut(s)	292, 333, 349, 382, 642, 875
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	717, 1046
BmuI	ACTGGG	1 cut(s)	33
BoxI	GACNNNNGTC	1 cut(s)	1119
BpiI	GAAGAC	1 cut(s)	322
Bpu1102I	GCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	2 cut(s)	788, 973
BpuMI	CCSGG	2 cut(s)	382, 642
Bsa29I	ATCGAT	2 cut(s)	426, 624
BsaJI	CCNNGG	4 cut(s)	291, 348, 453, 526
BsaWI	WCCGGW	1 cut(s)	847
Bse118I	RCCGGY	1 cut(s)	926
Bse1I	ACTGG	1 cut(s)	28
Bse21I	CCTNAGG	2 cut(s)	90, 1043
BseBI	CCWGG	4 cut(s)	292, 333, 349, 875
BseCI	ATCGAT	2 cut(s)	426, 624
BseDI	CCNNGG	4 cut(s)	291, 348, 453, 526
BseGI	GGATG	2 cut(s)	97, 884
BseMII	CTCAG	5 cut(s)	318, 524, 552, 1071, 1171
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	628
BseXI	GCAGC	6 cut(s)	116, 836, 910, 928, 956, 964
BsgI	GTGCAG	2 cut(s)	930, 951
BshFI	GGCC	3 cut(s)	169, 347, 878
BshNI	GGYRCC	1 cut(s)	760
BshVI	ATCGAT	2 cut(s)	426, 624
BsiHKAI	GWGCWC	1 cut(s)	1165
BsiHKCI	CYCGRG	1 cut(s)	610
BsiSI	CCGG	4 cut(s)	382, 642, 848, 927
BslFI	GGGAC	1 cut(s)	365
BsmAI	GTCTC	2 cut(s)	501, 1107
BsmBI	CGTCTC	1 cut(s)	1107
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	2 cut(s)	179, 655
BsnI	GGCC	3 cut(s)	169, 347, 878
BsoBI	CYCGRG	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	817, 1165
Bsp143I	GATC	8 cut(s)	295, 423, 427, 486, 522, 621, 706, 1134
Bsp1720I	GCTNAGC	1 cut(s)	561
BspACI	CCGC	3 cut(s)	467, 903, 1017
BspANI	GGCC	3 cut(s)	169, 347, 878
BspCNI	CTCAG	5 cut(s)	317, 525, 553, 1072, 1170
BspDI	ATCGAT	2 cut(s)	426, 624
BspHI	TCATGA	1 cut(s)	780
BspLI	GGNNCC	6 cut(s)	297, 353, 639, 762, 814, 901
BspMAI	CTGCAG	4 cut(s)	265, 946, 982, 1142
BspMI	ACCTGC	2 cut(s)	721, 896
BspPI	GGATC	4 cut(s)	290, 303, 517, 1142
BspT107I	GGYRCC	1 cut(s)	760
BsrFI	RCCGGY	1 cut(s)	926
BsrI	ACTGG	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	926
BssECI	CCNNGG	4 cut(s)	291, 348, 453, 526
BssMI	GATC	8 cut(s)	295, 423, 427, 486, 522, 621, 706, 1134
BssT1I	CCWWGG	2 cut(s)	453, 526
Bst2UI	CCWGG	4 cut(s)	292, 333, 349, 875
Bst4CI	ACNGT	2 cut(s)	140, 748
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstC8I	GCNNGC	3 cut(s)	62, 545, 829
BstDEI	CTNAG	8 cut(s)	90, 304, 326, 533, 561, 1043, 1080, 1157
BstF5I	GGATG	2 cut(s)	97, 884
BstKTI	GATC	8 cut(s)	298, 426, 430, 489, 525, 624, 709, 1137
BstMAI	GTCTC	2 cut(s)	501, 1107
BstMBI	GATC	8 cut(s)	295, 423, 427, 486, 522, 621, 706, 1134
BstMWI	GCNNNNNNNGC	7 cut(s)	571, 821, 875, 908, 923, 929, 938
BstNI	CCWGG	4 cut(s)	292, 333, 349, 875
BstNSI	RCATGY	3 cut(s)	64, 274, 698
BstPAI	GACNNNNGTC	1 cut(s)	1119
BstSCI	CCNGG	6 cut(s)	290, 331, 347, 380, 640, 873
BstSFI	CTRYAG	4 cut(s)	261, 942, 978, 1138
BstV1I	GCAGC	6 cut(s)	116, 836, 910, 928, 956, 964
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	3 cut(s)	295, 522, 1134
BstYI	RGATCY	3 cut(s)	295, 522, 1134
Bsu15I	ATCGAT	2 cut(s)	426, 624
Bsu36I	CCTNAGG	2 cut(s)	90, 1043
BsuRI	GGCC	3 cut(s)	169, 347, 878
BsuTUI	ATCGAT	2 cut(s)	426, 624
BtsCI	GGATG	2 cut(s)	97, 884
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	1 cut(s)	939
BveI	ACCTGC	2 cut(s)	721, 896
Cac8I	GCNNGC	3 cut(s)	62, 545, 829
CaiI	CAGNNNCTG	3 cut(s)	311, 481, 923
CciI	TCATGA	1 cut(s)	780
Cfr10I	RCCGGY	1 cut(s)	926
Cfr13I	GGNCC	2 cut(s)	352, 744
ClaI	ATCGAT	2 cut(s)	426, 624
CsiI	ACCWGGT	1 cut(s)	331
CviAII	CATG	9 cut(s)	61, 271, 634, 646, 695, 781, 832, 956, 1166
DdeI	CTNAG	8 cut(s)	90, 304, 326, 533, 561, 1043, 1080, 1157
DpnI	GATC	8 cut(s)	297, 425, 429, 488, 524, 623, 708, 1136
DpnII	GATC	8 cut(s)	295, 423, 427, 486, 522, 621, 706, 1134
DraIII	CACNNNGTG	1 cut(s)	672
DrdI	GACNNNNNNGTC	1 cut(s)	751
DseDI	GACNNNNNNGTC	1 cut(s)	751
EaeI	YGGCCR	2 cut(s)	167, 876
Eco130I	CCWWGG	2 cut(s)	453, 526
Eco24I	GRGCYC	1 cut(s)	817
Eco32I	GATATC	2 cut(s)	997, 1075
Eco47I	GGWCC	2 cut(s)	352, 744
Eco57I	CTGAAG	1 cut(s)	503
Eco81I	CCTNAGG	2 cut(s)	90, 1043
Eco88I	CYCGRG	1 cut(s)	610
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	4 cut(s)	290, 331, 347, 873
EcoRV	GATATC	2 cut(s)	997, 1075
EcoT14I	CCWWGG	2 cut(s)	453, 526
EcoT22I	ATGCAT	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	817
ErhI	CCWWGG	2 cut(s)	453, 526
Esp3I	CGTCTC	1 cut(s)	1107
FaeI	CATG	9 cut(s)	64, 274, 637, 649, 698, 784, 835, 959, 1169
FalI	AAGNNNNNCTT	1 cut(s)	1170
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	9 cut(s)	60, 270, 633, 645, 694, 780, 831, 955, 1165
Fnu4HI	GCNGC	7 cut(s)	105, 825, 903, 924, 942, 945, 978
FokI	GGATG	2 cut(s)	84, 871
FriOI	GRGCYC	1 cut(s)	817
Fsp4HI	GCNGC	7 cut(s)	105, 825, 903, 924, 942, 945, 978
FspBI	CTAG	1 cut(s)	821
GluI	GCNGC	7 cut(s)	105, 825, 903, 924, 942, 945, 978
HaeIII	GGCC	3 cut(s)	169, 347, 878
HapII	CCGG	4 cut(s)	382, 642, 848, 927
Hin1II	CATG	9 cut(s)	64, 274, 637, 649, 698, 784, 835, 959, 1169
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HinfI	GANTC	4 cut(s)	4, 308, 447, 881
HpaII	CCGG	4 cut(s)	382, 642, 848, 927
HphI	GGTGA	2 cut(s)	136, 181
Hpy166II	GTNNAC	2 cut(s)	722, 736
Hpy188I	TCNGA	6 cut(s)	15, 307, 364, 506, 1125, 1160
Hpy188III	TCNNGA	5 cut(s)	312, 781, 805, 990, 1034
Hpy8I	GTNNAC	2 cut(s)	722, 736
HpyAV	CCTTC	1 cut(s)	954
HpyCH4III	ACNGT	2 cut(s)	140, 748
HpyCH4IV	ACGT	2 cut(s)	38, 668
HpyF10VI	GCNNNNNNNGC	7 cut(s)	571, 821, 875, 908, 923, 929, 938
HpyF3I	CTNAG	8 cut(s)	90, 304, 326, 533, 561, 1043, 1080, 1157
HpySE526I	ACGT	2 cut(s)	38, 668
Hsp92II	CATG	9 cut(s)	64, 274, 637, 649, 698, 784, 835, 959, 1169
Kzo9I	GATC	8 cut(s)	295, 423, 427, 486, 522, 621, 706, 1134
LmnI	GCTCC	4 cut(s)	69, 812, 899, 963
Lsp1109I	GCAGC	6 cut(s)	116, 836, 910, 928, 956, 964
LweI	GCATC	2 cut(s)	717, 1046
MabI	ACCWGGT	1 cut(s)	331
MaeI	CTAG	1 cut(s)	821
MaeII	ACGT	2 cut(s)	38, 668
MaeIII	GTNAC	2 cut(s)	39, 403
MalI	GATC	8 cut(s)	297, 425, 429, 488, 524, 623, 708, 1136
MboI	GATC	8 cut(s)	295, 423, 427, 486, 522, 621, 706, 1134
MboII	GAAGA	3 cut(s)	327, 496, 716
MfeI	CAATTG	1 cut(s)	948
MflI	RGATCY	3 cut(s)	295, 522, 1134
MhlI	GDGCHC	2 cut(s)	817, 1165
MluCI	AATT	6 cut(s)	120, 233, 604, 677, 948, 1173
Mph1103I	ATGCAT	1 cut(s)	696
MroXI	GAANNNNTTC	2 cut(s)	177, 581
MseI	TTAA	4 cut(s)	149, 236, 798, 1152
MslI	CAYNNNNRTG	1 cut(s)	1024
MspA1I	CMGCKG	1 cut(s)	827
MspI	CCGG	4 cut(s)	382, 642, 848, 927
MspR9I	CCNGG	6 cut(s)	292, 333, 349, 382, 642, 875
MunI	CAATTG	1 cut(s)	948
Mva1269I	GAATGC	2 cut(s)	179, 655
MvaI	CCWGG	4 cut(s)	292, 333, 349, 875
MwoI	GCNNNNNNNGC	7 cut(s)	571, 821, 875, 908, 923, 929, 938
NciI	CCSGG	2 cut(s)	382, 642
NdeII	GATC	8 cut(s)	295, 423, 427, 486, 522, 621, 706, 1134
NlaIII	CATG	9 cut(s)	64, 274, 637, 649, 698, 784, 835, 959, 1169
NlaIV	GGNNCC	6 cut(s)	297, 353, 639, 762, 814, 901
NmuCI	GTSAC	1 cut(s)	403
NsiI	ATGCAT	1 cut(s)	696
NspI	RCATGY	3 cut(s)	64, 274, 698
PaeI	GCATGC	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	610
PagI	TCATGA	1 cut(s)	780
PaqCI	CACCTGC	1 cut(s)	896
PctI	GAATGC	2 cut(s)	179, 655
PdmI	GAANNNNTTC	2 cut(s)	177, 581
PfeI	GAWTC	4 cut(s)	4, 308, 447, 881
PkrI	GCNGC	7 cut(s)	106, 826, 904, 925, 943, 946, 979
PpuMI	RGGWCCY	1 cut(s)	352
PshAI	GACNNNNGTC	1 cut(s)	1119
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	4 cut(s)	290, 331, 347, 873
PspGI	CCWGG	4 cut(s)	290, 331, 347, 873
PspN4I	GGNNCC	6 cut(s)	297, 353, 639, 762, 814, 901
PspPI	GGNCC	2 cut(s)	352, 744
PspPPI	RGGWCCY	1 cut(s)	352
PspXI	VCTCGAGB	1 cut(s)	610
PstI	CTGCAG	4 cut(s)	265, 946, 982, 1142
PstNI	CAGNNNCTG	3 cut(s)	311, 481, 923
PsuI	RGATCY	3 cut(s)	295, 522, 1134
PvuII	CAGCTG	1 cut(s)	827
RseI	CAYNNNNRTG	1 cut(s)	1024
SaqAI	TTAA	4 cut(s)	149, 236, 798, 1152
SatI	GCNGC	7 cut(s)	105, 825, 903, 924, 942, 945, 978
Sau3AI	GATC	8 cut(s)	295, 423, 427, 486, 522, 621, 706, 1134
Sau96I	GGNCC	2 cut(s)	352, 744
ScrFI	CCNGG	6 cut(s)	292, 333, 349, 382, 642, 875
SduI	GDGCHC	2 cut(s)	817, 1165
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	2 cut(s)	717, 1046
SfcI	CTRYAG	4 cut(s)	261, 942, 978, 1138
Sfr274I	CTCGAG	1 cut(s)	610
SinI	GGWCC	2 cut(s)	352, 744
SlaI	CTCGAG	1 cut(s)	610
SmiMI	CAYNNNNRTG	1 cut(s)	1024
SmlI	CTYRAG	3 cut(s)	610, 803, 988
SmoI	CTYRAG	3 cut(s)	610, 803, 988
SphI	GCATGC	1 cut(s)	64
Sse9I	AATT	6 cut(s)	120, 233, 604, 677, 948, 1173
SsiI	CCGC	3 cut(s)	467, 903, 1017
SspMI	CTAG	1 cut(s)	821
StyD4I	CCNGG	6 cut(s)	290, 331, 347, 380, 640, 873
StyI	CCWWGG	2 cut(s)	453, 526
TaaI	ACNGT	2 cut(s)	140, 748
TaiI	ACGT	2 cut(s)	41, 671
TaqI	TCGA	4 cut(s)	426, 611, 624, 658
TasI	AATT	6 cut(s)	120, 233, 604, 677, 948, 1173
TauI	GCSGC	1 cut(s)	905
TfiI	GAWTC	4 cut(s)	4, 308, 447, 881
Tru1I	TTAA	4 cut(s)	149, 236, 798, 1152
Tru9I	TTAA	4 cut(s)	149, 236, 798, 1152
TscAI	CASTG	1 cut(s)	939
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	6 cut(s)	104, 824, 923, 941, 944, 977
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	8 cut(s)	17, 113, 557, 662, 769, 797, 873, 1182
TspGWI	ACGGA	2 cut(s)	1066, 1147
TspRI	CASTG	1 cut(s)	939
VpaK11BI	GGWCC	2 cut(s)	352, 744
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	3 cut(s)	64, 274, 698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	824
XhoI	CTCGAG	1 cut(s)	610
XmnI	GAANNNNTTC	2 cut(s)	177, 581
XspI	CTAG	1 cut(s)	821
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.