Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0022435

Physical Location & Seq

Genomic Coordinates Reverse (-)

20905981 .. 20907024

Gene Structure 1044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAATTAATAAAGGATAAATTTAAGCCTCCTTTGGAGCCTATAATTACTCTTGAAAGATTGTCAGATCATCCTGTGTCAGTGTTGTGTAAGCTTTGCGAGAAGCACAGAAAGTTGGTTAACATCAAAGGGGGGAGAAATTATTGGCATAATTTAAGCACTGCTAGTGTGTATGTTGATGGTATCTTAGTTGCCTCGGCATCTTATAAACGTATGGCAATTGCAAGGCTTCATGCTGCAAGAAAAGCTCTATCTGAGTTGTCCAAAACATTCGGCATAAGCTCCGAGTCAGTTGAAGTTGTTGCTGAAAATGAAGCTATAAAGAATTTGAATGTGCTTTGTGACAAGAAGAGGATCCCTAGACCAACTTACGAAATTGAGAAAGAATCTGGTCCTGCGCACAAGACGAGATATGTATCATCAGCTAAAATTGCAACTCCCGATGGCCTGCTATATACGATGGGATATGAAAAGCCAAGAAAACAAGATGCGGATAATTCTGCGGCTGCCTTGATGATCTTCGGTTTACTAGAATCTAACAACATCAAAGAAGCAGCAGATAGTAAGATTGGCTATTTTCCCTCAGTACTCTACAGACTCTGGGTTATGATTCGTCGGGTGATAGGGCTGCTAGTTTTATGTTTCATCCAAGGAACAGCTGTGTTAGTTATTTTCTTTATTGTGGTCAACTTACTTAAGCCGACCCCACCTAGTCCCAACTTAGTTAAGTCGACCTCATATAGTGAGAAAAAACTTTGTTTTTGTAGGTCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

259

Amino Acids

28.87

Weight (kDa)

9.61

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DND1_DSRM	PF14709	106 - 173	4.6e-07	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	107 - 173	5.1e-08	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022435)

Species	Orthologous Gene IDs
malus_domestica	MD11G1212400.v1.1
pyrus_communis	pycom11g18720 pycom11g18730 pycom11g18740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
Acc16I	TGCGCA	1 cut(s)	399
AccI	GTMKAC	1 cut(s)	731
AciI	CCGC	2 cut(s)	491, 503
AclWI	GGATC	2 cut(s)	349, 362
AcsI	RAATTY	2 cut(s)	20, 325
AfaI	GTAC	1 cut(s)	588
AflII	CTTAAG	1 cut(s)	695
AgsI	TTSAA	3 cut(s)	56, 296, 331
AluBI	AGCT	6 cut(s)	94, 248, 282, 317, 425, 659
AluI	AGCT	6 cut(s)	94, 248, 282, 317, 425, 659
AlwI	GGATC	2 cut(s)	349, 362
AlwNI	CAGNNNCTG	1 cut(s)	600
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	4 cut(s)	236, 506, 554, 628
ApoI	RAATTY	2 cut(s)	20, 325
AseI	ATTAAT	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	631
AvaII	GGWCC	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	354
BbvI	GCAGC	4 cut(s)	223, 493, 566, 615
BccI	CCATC	3 cut(s)	173, 437, 454
BfaI	CTAG	5 cut(s)	165, 360, 530, 632, 711
BfmI	CTRYAG	1 cut(s)	592
BfrI	CTTAAG	1 cut(s)	695
BisI	GCNGC	5 cut(s)	237, 504, 507, 555, 629
BlsI	GCNGC	5 cut(s)	238, 505, 508, 556, 630
BmcAI	AGTACT	1 cut(s)	588
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	39, 356
BmsI	GCATC	2 cut(s)	209, 478
BsaBI	GATNNNNATC	1 cut(s)	415
BsaJI	CCNNGG	2 cut(s)	195, 649
Bse8I	GATNNNNATC	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	195, 649
BseGI	GGATG	2 cut(s)	70, 645
BseJI	GATNNNNATC	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	246, 597
BseXI	GCAGC	4 cut(s)	223, 493, 566, 615
BshFI	GGCC	1 cut(s)	447
BslFI	GGGAC	1 cut(s)	699
BsmFI	GGGAC	1 cut(s)	699
BsnI	GGCC	1 cut(s)	447
Bsp143I	GATC	3 cut(s)	67, 354, 516
BspACI	CCGC	2 cut(s)	491, 503
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	2 cut(s)	247, 596
BspLI	GGNNCC	2 cut(s)	39, 356
BspPI	GGATC	2 cut(s)	349, 362
BspTI	CTTAAG	1 cut(s)	695
BssECI	CCNNGG	2 cut(s)	195, 649
BssMI	GATC	3 cut(s)	67, 354, 516
BssT1I	CCWWGG	1 cut(s)	649
Bst6I	CTCTTC	1 cut(s)	344
BstAFI	CTTAAG	1 cut(s)	695
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	4 cut(s)	187, 255, 583, 721
BstF5I	GGATG	2 cut(s)	70, 645
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	3 cut(s)	70, 357, 519
BstMBI	GATC	3 cut(s)	67, 354, 516
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 431
BstSFI	CTRYAG	1 cut(s)	592
BstV1I	GCAGC	4 cut(s)	223, 493, 566, 615
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	70, 645
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	87, 159
Cac8I	GCNNGC	1 cut(s)	449
CaiI	CAGNNNCTG	1 cut(s)	600
CfoI	GCGC	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	587
CviAII	CATG	1 cut(s)	233
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	4 cut(s)	187, 255, 583, 721
DpnI	GATC	3 cut(s)	69, 356, 518
DpnII	GATC	3 cut(s)	67, 354, 516
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	649
Eco47I	GGWCC	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	649
ErhI	CCWWGG	1 cut(s)	649
FaeI	CATG	1 cut(s)	236
FaqI	GGGAC	1 cut(s)	699
FatI	CATG	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	5 cut(s)	237, 504, 507, 555, 629
FokI	GGATG	2 cut(s)	57, 632
Fsp4HI	GCNGC	5 cut(s)	237, 504, 507, 555, 629
FspBI	CTAG	5 cut(s)	165, 360, 530, 632, 711
FspI	TGCGCA	1 cut(s)	399
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	5 cut(s)	237, 504, 507, 555, 629
HaeIII	GGCC	1 cut(s)	447
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	3 cut(s)	121, 688, 732
HindII	GTYRAC	3 cut(s)	121, 688, 732
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	5 cut(s)	287, 386, 533, 597, 610
HpaI	GTTAAC	1 cut(s)	121
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	4 cut(s)	121, 527, 688, 732
Hpy188I	TCNGA	3 cut(s)	67, 256, 286
Hpy188III	TCNNGA	2 cut(s)	53, 440
Hpy8I	GTNNAC	4 cut(s)	121, 527, 688, 732
Hpy99I	CGWCG	1 cut(s)	618
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	3 cut(s)	224, 239, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 431
HpyF3I	CTNAG	4 cut(s)	187, 255, 583, 721
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	1 cut(s)	398
KspAI	GTTAAC	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	67, 354, 516
LmnI	GCTCC	2 cut(s)	37, 287
LpnPI	CCDG	5 cut(s)	87, 375, 408, 461, 586
Lsp1109I	GCAGC	4 cut(s)	223, 493, 566, 615
LweI	GCATC	2 cut(s)	209, 478
MaeI	CTAG	5 cut(s)	165, 360, 530, 632, 711
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	3 cut(s)	69, 356, 518
MboI	GATC	3 cut(s)	67, 354, 516
MboII	GAAGA	2 cut(s)	361, 511
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	1 cut(s)	354
MlyI	GAGTC	2 cut(s)	296, 591
MnlI	CCTC	5 cut(s)	39, 205, 345, 592, 745
MseI	TTAA	6 cut(s)	8, 24, 120, 155, 696, 726
MspA1I	CMGCKG	1 cut(s)	659
MspCI	CTTAAG	1 cut(s)	695
MunI	CAATTG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	245, 431
NdeII	GATC	3 cut(s)	67, 354, 516
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	2 cut(s)	39, 356
NmeAIII	GCCGAG	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	341
NsbI	TGCGCA	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	386, 533, 610
PkrI	GCNGC	5 cut(s)	238, 505, 508, 556, 630
PleI	GAGTC	2 cut(s)	295, 591
PpsI	GAGTC	2 cut(s)	295, 591
PshBI	ATTAAT	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	39, 356
PspPI	GGNCC	1 cut(s)	392
PstNI	CAGNNNCTG	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	354
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
SalI	GTCGAC	1 cut(s)	730
SaqAI	TTAA	6 cut(s)	8, 24, 120, 155, 696, 726
SatI	GCNGC	5 cut(s)	237, 504, 507, 555, 629
Sau3AI	GATC	3 cut(s)	67, 354, 516
Sau96I	GGNCC	1 cut(s)	392
ScaI	AGTACT	1 cut(s)	588
SchI	GAGTC	2 cut(s)	296, 591
SfaNI	GCATC	2 cut(s)	209, 478
SfcI	CTRYAG	1 cut(s)	592
SinI	GGWCC	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
SsiI	CCGC	2 cut(s)	491, 503
SspMI	CTAG	5 cut(s)	165, 360, 530, 632, 711
StyI	CCWWGG	1 cut(s)	649
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	731
TatI	WGTACW	1 cut(s)	586
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	3 cut(s)	386, 533, 610
Tru1I	TTAA	6 cut(s)	8, 24, 120, 155, 696, 726
Tru9I	TTAA	6 cut(s)	8, 24, 120, 155, 696, 726
TscAI	CASTG	2 cut(s)	87, 166
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	4 cut(s)	236, 506, 554, 628
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	5 cut(s)	17, 221, 327, 483, 634
TspRI	CASTG	2 cut(s)	87, 166
Vha464I	CTTAAG	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	392
VspI	ATTAAT	1 cut(s)	8
XapI	RAATTY	2 cut(s)	20, 325
XmiI	GTMKAC	1 cut(s)	731
XspI	CTAG	5 cut(s)	165, 360, 530, 632, 711
ZrmI	AGTACT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.