Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0022435

Physical Location & Seq

Genomic Coordinates Reverse (-)

20912956 .. 20915447

Gene Structure 2492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGCGCGCTGGCCTCACTGAATGCTTGGAAAAAGGGTTACGGAATATTGAAGTAGAAGTGGATGTGAAAGGTCTGGTTGAGATGCTGAAAACTGGGGAGGTTTTGGATACATCGGTGGAAGTTTTACTTCACCACACCTCAACGGCGATATTCCAATTCAGCAACATGAAGCTCTTCACTAAGTCAGCATCCCTCGATCGCAATCTCCAGCCATCGCCGGAAATGAAAGACAAAGTGATGGCCATGGAGAAAATCGTAGGCCACAACTTCAAGAACAAGAGGCTTCTAGAGGAAGCTCTTACACACTCCTCCATCACTTGCTCTCCCTCGTATAAGCGTCTCGCGGTGCTTGGCGACGCCACCCTTGAACTCGCTATGAGTAATCACCTCTTTCTTGCTTACCCCAACATGGATCAAGGCAACTTCACTAATCTCCGCTCCGCCAATGTTAATAACGTGAAGTTCGCATGCGCCGCTGTAAAACATGGTTTTTATGGCTGCCTTAACCAATCATCTGCTTTCGATGATGAGGTTGGGGAGTTTGCCAAAGCGGTATCGGAATGGAATGAAAAATATGAGATGACGCTTGCGTATGATGGGACCATACAACCCAATCATGTTCTTGGAGATATTGTGGAGTCAGTGGCAGCTGCTATATACATTGACTTGAACTTTGATCTGGACAAACTATGGATGAAATTTAAGCATCTTTTGGAGCCTATAATTACTCTCGAAGGATTGTCAGATCACCCTGTGTCAGAGTTGTATAAGCTTTGCCAGAAGCATGGAAAGTTCGTTAAAATCAAGGAGGACATAAATGATACCAAAAATTTAAGTACTGCTAGTGTGTATGTTGATGGTATCTTAATTGCCTCGGCTTCTTATAAACATATGGCAATTGCAAGGCTTCATGCTGCAAGAAAAGCTCTACCTGAGTTGTCTAAAACATTCGGCATAAGCTCTGAGTTGGTTGAAGTTGCTGCTGAAAATGAAGCTAAACAGAATTTGAATGTGCTTTGTGACAAGAAGAGGATCCCTAGACCAACTTACAACAGAGAGAAAGAATCTGGTCCTGCACATGAGAAGAGAATTGTATCATCAGTTGAAATTTCAACTTTAGAGCTAAAAATGATGGGAGATGAAAGGTCGAGAATAACAGATGCGGAGAATTCTGCGGCTGCCTTGATGATCCTTGGTTTACTACAATCTGATGCTATGACCAACACCAAAGAAGCAGCTAATAGTAGGATTGGTTATTTTCCCTCAGTACTCTACAGACTTTGGGTTATGATTCGTTGGGTGACAAGGCTGCTTGTTTTTTGTTTCAAAGGAATAAGTCTGTTAGTTATTTTCTTTACTGTGGTCAAATTAGTTATTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

461

Amino Acids

51.45

Weight (kDa)

6.69

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	92 - 225	2.1e-11	Ribonuclease-III-like
Ribonuclease_3	PF00636	113 - 222	4.1e-16	Ribonuclease III domain
DND1_DSRM	PF14709	331 - 399	1.2e-08	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	332 - 398	1.6e-06	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0022435)

Species	Orthologous Gene IDs
malus_domestica	MD11G1212400.v1.1
pyrus_communis	pycom11g18720 pycom11g18730 pycom11g18740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	885
AccBSI	CCGCTC	1 cut(s)	438
AccII	CGCG	2 cut(s)	6, 344
AciI	CCGC	7 cut(s)	344, 436, 441, 474, 551, 1163, 1175
AclWI	GGATC	4 cut(s)	420, 1027, 1040, 1183
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	5 cut(s)	698, 829, 1003, 1107, 1168
AcyI	GRCGYC	1 cut(s)	357
AdeI	CACNNNGTG	1 cut(s)	754
AfaI	GTAC	2 cut(s)	838, 1269
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	9 cut(s)	50, 271, 368, 670, 974, 1009, 1106, 1113, 1327
AluBI	AGCT	9 cut(s)	172, 296, 650, 772, 926, 960, 995, 1123, 1238
AluI	AGCT	9 cut(s)	172, 296, 650, 772, 926, 960, 995, 1123, 1238
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	4 cut(s)	420, 1027, 1040, 1183
AoxI	GGCC	3 cut(s)	10, 240, 259
ApeKI	GCWGC	8 cut(s)	498, 647, 650, 914, 980, 1178, 1235, 1309
ApoI	RAATTY	5 cut(s)	698, 829, 1003, 1107, 1168
ArsI	GACNNNNNNTTYG	2 cut(s)	656, 688
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	3 cut(s)	6, 8, 473
AspS9I	GGNCC	2 cut(s)	600, 1070
AsuHPI	GGTGA	4 cut(s)	122, 377, 740, 1312
AvaII	GGWCC	2 cut(s)	600, 1070
BaeI	ACNNNNGTAYC	2 cut(s)	99, 132
BalI	TGGCCA	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	1032
BbvI	GCAGC	8 cut(s)	485, 637, 659, 901, 967, 1165, 1247, 1296
BccI	CCATC	6 cut(s)	220, 232, 320, 590, 851, 1126
BceAI	ACGGC	1 cut(s)	159
BciVI	GTATCC	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	3 cut(s)	287, 843, 1038
BfmI	CTRYAG	1 cut(s)	1273
BfuI	GTATCC	1 cut(s)	100
BmcAI	AGTACT	2 cut(s)	838, 1269
Bme18I	GGWCC	2 cut(s)	600, 1070
BmgT120I	GGNCC	2 cut(s)	600, 1070
BmiI	GGNNCC	3 cut(s)	601, 717, 1034
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	5 cut(s)	72, 197, 715, 1150, 1201
BmuI	ACTGGG	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	357
BsaJI	CCNNGG	3 cut(s)	243, 873, 1192
BsaXI	ACNNNNNCTCC	4 cut(s)	307, 337, 618, 648
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse1I	ACTGG	1 cut(s)	97
Bse8I	GATNNNNATC	1 cut(s)	201
BseDI	CCNNGG	3 cut(s)	243, 873, 1192
BseGI	GGATG	3 cut(s)	67, 188, 699
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMII	CTCAG	3 cut(s)	924, 954, 1278
BseNI	ACTGG	1 cut(s)	97
BsePI	GCGCGC	1 cut(s)	4
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	8 cut(s)	485, 637, 659, 901, 967, 1165, 1247, 1296
BsgI	GTGCAG	1 cut(s)	1059
Bsh1236I	CGCG	2 cut(s)	6, 344
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	3 cut(s)	12, 242, 261
BsiEI	CGRYCG	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	344
BsmBI	CGTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	3 cut(s)	12, 242, 261
Bsp143I	GATC	6 cut(s)	196, 412, 676, 745, 1032, 1188
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	7 cut(s)	344, 436, 441, 474, 551, 1163, 1175
BspANI	GGCC	3 cut(s)	12, 242, 261
BspCNI	CTCAG	3 cut(s)	925, 955, 1277
BspFNI	CGCG	2 cut(s)	6, 344
BspLI	GGNNCC	3 cut(s)	601, 717, 1034
BspPI	GGATC	4 cut(s)	420, 1027, 1040, 1183
BspQI	GCTCTTC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	243, 873, 1192
BssHII	GCGCGC	1 cut(s)	4
BssMI	GATC	6 cut(s)	196, 412, 676, 745, 1032, 1188
BssNI	GRCGYC	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	243, 1192
Bst4CI	ACNGT	1 cut(s)	1360
Bst6I	CTCTTC	3 cut(s)	179, 1022, 1079
BstACI	GRCGYC	1 cut(s)	357
BstC8I	GCNNGC	4 cut(s)	6, 10, 469, 588
BstDEI	CTNAG	4 cut(s)	180, 933, 963, 1264
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	3 cut(s)	67, 188, 699
BstFNI	CGCG	2 cut(s)	6, 344
BstHHI	GCGC	3 cut(s)	6, 8, 473
BstKTI	GATC	6 cut(s)	199, 415, 679, 748, 1035, 1191
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	6 cut(s)	196, 412, 676, 745, 1032, 1188
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 923
BstNSI	RCATGY	1 cut(s)	471
BstSFI	CTRYAG	1 cut(s)	1273
BstUI	CGCG	2 cut(s)	6, 344
BstV1I	GCAGC	8 cut(s)	485, 637, 659, 901, 967, 1165, 1247, 1296
BstX2I	RGATCY	1 cut(s)	1032
BstXI	CCANNNNNNTGG	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	1032
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	3 cut(s)	12, 242, 261
BtgI	CCRYGG	1 cut(s)	243
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	67, 188, 699
BtsIMutI	CAGTG	2 cut(s)	15, 648
Cac8I	GCNNGC	4 cut(s)	6, 10, 469, 588
CfoI	GCGC	3 cut(s)	6, 8, 473
Cfr13I	GGNCC	2 cut(s)	600, 1070
CseI	GACGC	3 cut(s)	326, 365, 592
Csp6I	GTAC	2 cut(s)	837, 1268
CviAII	CATG	9 cut(s)	166, 244, 409, 468, 485, 617, 785, 911, 1079
CviQI	GTAC	2 cut(s)	837, 1268
DdeI	CTNAG	4 cut(s)	180, 933, 963, 1264
DpnI	GATC	6 cut(s)	198, 414, 678, 747, 1034, 1190
DpnII	GATC	6 cut(s)	196, 412, 676, 745, 1032, 1188
DraIII	CACNNNGTG	1 cut(s)	754
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	3 cut(s)	179, 1022, 1079
EarI	CTCTTC	3 cut(s)	179, 1022, 1079
EciI	GGCGGA	1 cut(s)	430
Eco130I	CCWWGG	2 cut(s)	243, 1192
Eco47I	GGWCC	2 cut(s)	600, 1070
EcoRI	GAATTC	1 cut(s)	1168
EcoT14I	CCWWGG	2 cut(s)	243, 1192
ErhI	CCWWGG	2 cut(s)	243, 1192
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	9 cut(s)	169, 247, 412, 471, 488, 620, 788, 914, 1082
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	9 cut(s)	165, 243, 408, 467, 484, 616, 784, 910, 1078
FauNDI	CATATG	1 cut(s)	891
FokI	GGATG	3 cut(s)	74, 175, 706
FspBI	CTAG	3 cut(s)	287, 843, 1038
GlaI	GCGC	3 cut(s)	5, 7, 472
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	3 cut(s)	12, 242, 261
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	3 cut(s)	326, 365, 592
HhaI	GCGC	3 cut(s)	6, 8, 473
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	9 cut(s)	169, 247, 412, 471, 488, 620, 788, 914, 1082
Hin6I	GCGC	3 cut(s)	4, 6, 471
HinP1I	GCGC	3 cut(s)	4, 6, 471
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	3 cut(s)	638, 1064, 1291
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	4 cut(s)	122, 377, 740, 1312
Hpy166II	GTNNAC	1 cut(s)	1199
Hpy188I	TCNGA	5 cut(s)	559, 745, 760, 964, 1210
Hpy188III	TCNNGA	5 cut(s)	271, 287, 680, 731, 1149
Hpy8I	GTNNAC	1 cut(s)	1199
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	728
HpyCH4III	ACNGT	1 cut(s)	1360
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	3 cut(s)	902, 917, 1076
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 923
HpyF3I	CTNAG	4 cut(s)	180, 933, 963, 1264
HpySE526I	ACGT	1 cut(s)	456
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	9 cut(s)	169, 247, 412, 471, 488, 620, 788, 914, 1082
HspAI	GCGC	3 cut(s)	4, 6, 471
Kzo9I	GATC	6 cut(s)	196, 412, 676, 745, 1032, 1188
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	443, 715
Lsp1109I	GCAGC	8 cut(s)	485, 637, 659, 901, 967, 1165, 1247, 1296
LweI	GCATC	5 cut(s)	72, 197, 715, 1150, 1201
MaeI	CTAG	3 cut(s)	287, 843, 1038
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	3 cut(s)	36, 1019, 1300
MalI	GATC	6 cut(s)	198, 414, 678, 747, 1034, 1190
MbiI	CCGCTC	1 cut(s)	438
MboI	GATC	6 cut(s)	196, 412, 676, 745, 1032, 1188
MboII	GAAGA	3 cut(s)	166, 1039, 1096
MfeI	CAATTG	1 cut(s)	897
MflI	RGATCY	1 cut(s)	1032
MlsI	TGGCCA	1 cut(s)	242
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	647
Mox20I	TGGCCA	1 cut(s)	242
MroXI	GAANNNNTTC	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	6 cut(s)	450, 504, 702, 798, 833, 866
Msp20I	TGGCCA	1 cut(s)	242
MspA1I	CMGCKG	2 cut(s)	476, 650
MspI	CCGG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	897
Mva1269I	GAATGC	1 cut(s)	26
MvnI	CGCG	2 cut(s)	6, 344
MwoI	GCNNNNNNNGC	2 cut(s)	473, 923
NcoI	CCATGG	1 cut(s)	243
NdeI	CATATG	1 cut(s)	891
NdeII	GATC	6 cut(s)	196, 412, 676, 745, 1032, 1188
NlaIII	CATG	9 cut(s)	169, 247, 412, 471, 488, 620, 788, 914, 1082
NlaIV	GGNNCC	3 cut(s)	601, 717, 1034
NmeAIII	GCCGAG	1 cut(s)	854
NmuCI	GTSAC	2 cut(s)	1019, 1300
NspI	RCATGY	1 cut(s)	471
PaeI	GCATGC	1 cut(s)	471
PauI	GCGCGC	1 cut(s)	4
PciSI	GCTCTTC	1 cut(s)	179
PctI	GAATGC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	1064, 1291
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
PsiI	TTATAA	1 cut(s)	885
PspN4I	GGNNCC	3 cut(s)	601, 717, 1034
PspPI	GGNCC	2 cut(s)	600, 1070
PsuI	RGATCY	1 cut(s)	1032
PteI	GCGCGC	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	2 cut(s)	838, 1269
RsaNI	GTAC	2 cut(s)	837, 1268
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	6 cut(s)	450, 504, 702, 798, 833, 866
Sau3AI	GATC	6 cut(s)	196, 412, 676, 745, 1032, 1188
Sau96I	GGNCC	2 cut(s)	600, 1070
ScaI	AGTACT	2 cut(s)	838, 1269
SchI	GAGTC	1 cut(s)	647
SfaNI	GCATC	5 cut(s)	72, 197, 715, 1150, 1201
SfcI	CTRYAG	1 cut(s)	1273
SinI	GGWCC	2 cut(s)	600, 1070
SphI	GCATGC	1 cut(s)	471
SsiI	CCGC	7 cut(s)	344, 436, 441, 474, 551, 1163, 1175
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	3 cut(s)	287, 843, 1038
StyI	CCWWGG	2 cut(s)	243, 1192
TaaI	ACNGT	1 cut(s)	1360
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	4 cut(s)	195, 522, 732, 1148
TatI	WGTACW	2 cut(s)	836, 1267
TauI	GCSGC	2 cut(s)	476, 1178
TfiI	GAWTC	2 cut(s)	1064, 1291
Tru1I	TTAA	6 cut(s)	450, 504, 702, 798, 833, 866
Tru9I	TTAA	6 cut(s)	450, 504, 702, 798, 833, 866
TscAI	CASTG	2 cut(s)	22, 648
TseFI	GTSAC	2 cut(s)	1019, 1300
TseI	GCWGC	8 cut(s)	498, 647, 650, 914, 980, 1178, 1235, 1309
Tsp45I	GTSAC	2 cut(s)	1019, 1300
TspDTI	ATGAA	7 cut(s)	182, 239, 582, 710, 899, 1005, 1155
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	2 cut(s)	22, 648
VpaK11BI	GGWCC	2 cut(s)	600, 1070
XapI	RAATTY	5 cut(s)	698, 829, 1003, 1107, 1168
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	1 cut(s)	471
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	3 cut(s)	287, 843, 1038
ZrmI	AGTACT	2 cut(s)	838, 1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.