Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0022435

Physical Location & Seq

Genomic Coordinates Reverse (-)

20916769 .. 20925166

Gene Structure 8398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAAACTCTTCACTACCTCAGCGTCCCTCGATCGTGCGCTTCAGCCATCGCCGGAAATGAAAGATGAAGTGATGGCCATGGAGAAAATCGTAGGCCACAACTTCAAGAACAAGAGGCTTCTAGAGGAAGCTCTCACACACTCCTCCATCACTTACCTTCCCTCGTATAAGCGTCTCGCGGTGCTCGGCGACGCCGCCCTTGGCCTCGCTATGAGTAAGCACCTCTTTCTTGCGTACCCCAATATGGATCAAGGCAACTTCTCTAAGCTCCGCTCCGCCAATGTTAGTAGGGTGAAGTTCGCATGCGCCGCTGTAAAACATGGTTTTTATGGCTACCTTCGCCACAGATCACGTGCTCTCGACAATGAGGTTAGGGAGTTTGCCAAAGAGGTATCGATATGGGATGGAAAAAATGAGGCGACGCGTGTATATGATGGGGCTATACAACCCAGTCGTGTTCTTGCAGAAATTGTGGAGTCAGTGGCAGCTGCTATATACATTGACTTGAACTTTGATCTGGACAAACTATGGATGAAATTTAAGCATCTTTTGGAGCCTATAATTACTCTCGAAGGATTGTCAGATCACCCTGTGTCAGAGTTGTATAAGCTTTGCCAGAAGCATGGAAAGTTCGTTAAAATCAAGGAGGACATAAATGATACCAAAAATTTAAGTATTGCTAGTGTGTATGTTGATGGTATCTTAATTGCCTCGGCTTCTTATAAACATATGGCAATTGCAAGGCTTCATGCTGCAAGAAAAGCTCTACCTGAGTTGTCCAAAACATTCGGCATAAGCTCTGAGTTGGTTGAAGTTGCTGCTGAAAATGAAGCCAAACAGAATTTGAATGTGCTTTGTGACAAGAAGAGGATCCCTAGACCAACTTACAACAAAGAGAAAGAATCTGGTCCTGCACATGAGAAGAGATTTGTATCATCAGTTGAAATTGCAACTTTAGAGCTAAAAATGATGGGAGATGAAAGGTCGAGAATAAAAGATGCGGAGAATTCTGCGGCTGCCTTGATGATCCTTGGTTTACTACAATCTGATACTATGACCAACACCGAAGAAGCAGCTAATAGTAGGATTGGTTATTTTCCCTCAGTACTCTACAGACTTTGGGTTATGATTCGTTGGGTGACAAGGCTGCTTGTTTTTTGTTTCAAAGGAATAAGCCTGTTAGTTATTTTCTTTGCTGTGGTCAAATTAGTTATTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM Ribonuclease_3 dsrm

Protein Analysis

407

Amino Acids

45.66

Weight (kDa)

9.14

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	37 - 171	1.9e-11	Ribonuclease-III-like
Ribonuclease_3	PF00636	58 - 168	2.7e-18	Ribonuclease III domain
DND1_DSRM	PF14709	277 - 345	1.2e-10	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	278 - 344	8.1e-10	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0022435)

Species	Orthologous Gene IDs
malus_domestica	MD11G1212400.v1.1
pyrus_communis	pycom11g18720 pycom11g18730 pycom11g18740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	723
AccBSI	CCGCTC	1 cut(s)	273
AccII	CGCG	2 cut(s)	179, 424
AciI	CCGC	7 cut(s)	179, 195, 271, 276, 309, 1001, 1013
AclWI	GGATC	4 cut(s)	255, 865, 878, 1021
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	4 cut(s)	536, 667, 841, 1006
AcuI	CTGAAG	1 cut(s)	26
AcvI	CACGTG	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	192
AdeI	CACNNNGTG	1 cut(s)	592
AfaI	GTAC	2 cut(s)	236, 1107
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	422
AgsI	TTSAA	6 cut(s)	106, 508, 812, 847, 944, 1165
AluBI	AGCT	8 cut(s)	131, 268, 488, 610, 764, 798, 961, 1076
AluI	AGCT	8 cut(s)	131, 268, 488, 610, 764, 798, 961, 1076
Alw21I	GWGCWC	2 cut(s)	186, 358
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	4 cut(s)	255, 865, 878, 1021
AoxI	GGCC	3 cut(s)	75, 94, 202
ApeKI	GCWGC	7 cut(s)	485, 488, 752, 818, 1016, 1073, 1147
ApoI	RAATTY	4 cut(s)	536, 667, 841, 1006
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	40, 308
AspS9I	GGNCC	1 cut(s)	908
AsuHPI	GGTGA	3 cut(s)	304, 578, 1150
AvaII	GGWCC	1 cut(s)	908
BalI	TGGCCA	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	870
BbrPI	CACGTG	1 cut(s)	353
Bbv12I	GWGCWC	2 cut(s)	186, 358
BbvCI	CCTCAGC	1 cut(s)	19
BbvI	GCAGC	7 cut(s)	475, 497, 739, 805, 1003, 1085, 1134
BccI	CCATC	7 cut(s)	55, 67, 155, 398, 428, 689, 964
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	3 cut(s)	122, 681, 876
BfmI	CTRYAG	1 cut(s)	1111
BmcAI	AGTACT	1 cut(s)	1107
Bme18I	GGWCC	1 cut(s)	908
BmgT120I	GGNCC	1 cut(s)	908
BmiI	GGNNCC	2 cut(s)	555, 872
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	2 cut(s)	553, 988
BmuI	ACTGGG	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	931
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	4 cut(s)	78, 199, 711, 1030
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	931
BseCI	ATCGAT	1 cut(s)	395
BseDI	CCNNGG	4 cut(s)	78, 199, 711, 1030
BseGI	GGATG	2 cut(s)	409, 537
BseJI	GATNNNNATC	1 cut(s)	931
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	4 cut(s)	33, 762, 792, 1116
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	7 cut(s)	475, 497, 739, 805, 1003, 1085, 1134
BsgI	GTGCAG	1 cut(s)	897
Bsh1236I	CGCG	2 cut(s)	179, 424
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	3 cut(s)	77, 96, 204
BshVI	ATCGAT	1 cut(s)	395
BsiEI	CGRYCG	1 cut(s)	34
BsiHKAI	GWGCWC	2 cut(s)	186, 358
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	179
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	3 cut(s)	77, 96, 204
Bsp1286I	GDGCHC	2 cut(s)	186, 358
Bsp143I	GATC	7 cut(s)	31, 247, 347, 514, 583, 870, 1026
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	7 cut(s)	179, 195, 271, 276, 309, 1001, 1013
BspANI	GGCC	3 cut(s)	77, 96, 204
BspCNI	CTCAG	4 cut(s)	32, 763, 793, 1115
BspDI	ATCGAT	1 cut(s)	395
BspFNI	CGCG	2 cut(s)	179, 424
BspLI	GGNNCC	2 cut(s)	555, 872
BspPI	GGATC	4 cut(s)	255, 865, 878, 1021
BsrBI	CCGCTC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	4 cut(s)	78, 199, 711, 1030
BssMI	GATC	7 cut(s)	31, 247, 347, 514, 583, 870, 1026
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	3 cut(s)	78, 199, 1030
Bst6I	CTCTTC	3 cut(s)	14, 860, 917
BstACI	GRCGYC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	5 cut(s)	19, 264, 771, 801, 1102
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	409, 537
BstFNI	CGCG	2 cut(s)	179, 424
BstHHI	GCGC	2 cut(s)	40, 308
BstKTI	GATC	7 cut(s)	34, 250, 350, 517, 586, 873, 1029
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	7 cut(s)	31, 247, 347, 514, 583, 870, 1026
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 339, 761
BstNSI	RCATGY	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	1111
BstUI	CGCG	2 cut(s)	179, 424
BstV1I	GCAGC	7 cut(s)	475, 497, 739, 805, 1003, 1085, 1134
BstX2I	RGATCY	1 cut(s)	870
BstXI	CCANNNNNNTGG	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	870
Bsu15I	ATCGAT	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	77, 96, 204
BsuTUI	ATCGAT	1 cut(s)	395
BtgI	CCRYGG	1 cut(s)	78
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	409, 537
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	2 cut(s)	40, 308
Cfr13I	GGNCC	1 cut(s)	908
ClaI	ATCGAT	1 cut(s)	395
CseI	GACGC	4 cut(s)	12, 161, 200, 430
Csp6I	GTAC	2 cut(s)	235, 1106
CviAII	CATG	6 cut(s)	79, 303, 320, 623, 749, 917
CviQI	GTAC	2 cut(s)	235, 1106
DdeI	CTNAG	5 cut(s)	19, 264, 771, 801, 1102
DpnI	GATC	7 cut(s)	33, 249, 349, 516, 585, 872, 1028
DpnII	GATC	7 cut(s)	31, 247, 347, 514, 583, 870, 1026
DraIII	CACNNNGTG	1 cut(s)	592
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	3 cut(s)	14, 860, 917
EarI	CTCTTC	3 cut(s)	14, 860, 917
EciI	GGCGGA	1 cut(s)	265
Eco130I	CCWWGG	3 cut(s)	78, 199, 1030
Eco47I	GGWCC	1 cut(s)	908
Eco57I	CTGAAG	1 cut(s)	26
Eco72I	CACGTG	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	1006
EcoT14I	CCWWGG	3 cut(s)	78, 199, 1030
ErhI	CCWWGG	3 cut(s)	78, 199, 1030
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	6 cut(s)	82, 306, 323, 626, 752, 920
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	6 cut(s)	78, 302, 319, 622, 748, 916
FauNDI	CATATG	1 cut(s)	729
FokI	GGATG	2 cut(s)	416, 544
FspBI	CTAG	3 cut(s)	122, 681, 876
GlaI	GCGC	2 cut(s)	39, 307
HaeIII	GGCC	3 cut(s)	77, 96, 204
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	4 cut(s)	12, 161, 200, 430
HhaI	GCGC	2 cut(s)	40, 308
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	6 cut(s)	82, 306, 323, 626, 752, 920
Hin6I	GCGC	2 cut(s)	38, 306
HinP1I	GCGC	2 cut(s)	38, 306
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	3 cut(s)	476, 902, 1129
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	3 cut(s)	304, 578, 1150
Hpy166II	GTNNAC	1 cut(s)	1037
Hpy188I	TCNGA	4 cut(s)	583, 598, 802, 1048
Hpy188III	TCNNGA	6 cut(s)	106, 122, 359, 518, 569, 987
Hpy8I	GTNNAC	1 cut(s)	1037
Hpy99I	CGWCG	2 cut(s)	194, 424
HpyAV	CCTTC	3 cut(s)	167, 347, 566
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	5 cut(s)	464, 740, 755, 914, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 339, 761
HpyF3I	CTNAG	5 cut(s)	19, 264, 771, 801, 1102
HpySE526I	ACGT	1 cut(s)	352
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	6 cut(s)	82, 306, 323, 626, 752, 920
HspAI	GCGC	2 cut(s)	38, 306
Kzo9I	GATC	7 cut(s)	31, 247, 347, 514, 583, 870, 1026
LmnI	GCTCC	3 cut(s)	273, 278, 553
LpnPI	CCDG	9 cut(s)	66, 463, 503, 603, 629, 783, 891, 924, 1190
Lsp1109I	GCAGC	7 cut(s)	475, 497, 739, 805, 1003, 1085, 1134
LweI	GCATC	2 cut(s)	553, 988
MaeI	CTAG	3 cut(s)	122, 681, 876
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	2 cut(s)	857, 1138
MalI	GATC	7 cut(s)	33, 249, 349, 516, 585, 872, 1028
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	7 cut(s)	31, 247, 347, 514, 583, 870, 1026
MboII	GAAGA	3 cut(s)	877, 934, 1079
MfeI	CAATTG	1 cut(s)	735
MflI	RGATCY	1 cut(s)	870
MhlI	GDGCHC	2 cut(s)	186, 358
MlsI	TGGCCA	1 cut(s)	77
MluI	ACGCGT	1 cut(s)	422
MluNI	TGGCCA	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	485
Mox20I	TGGCCA	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	4 cut(s)	540, 636, 671, 704
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	2 cut(s)	311, 488
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	735
MvnI	CGCG	2 cut(s)	179, 424
MwoI	GCNNNNNNNGC	3 cut(s)	308, 339, 761
NcoI	CCATGG	1 cut(s)	78
NdeI	CATATG	1 cut(s)	729
NdeII	GATC	7 cut(s)	31, 247, 347, 514, 583, 870, 1026
NlaIII	CATG	6 cut(s)	82, 306, 323, 626, 752, 920
NlaIV	GGNNCC	2 cut(s)	555, 872
NmeAIII	GCCGAG	2 cut(s)	165, 692
NmuCI	GTSAC	2 cut(s)	857, 1138
NspI	RCATGY	1 cut(s)	306
PaeI	GCATGC	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	902, 1129
Ple19I	CGATCG	1 cut(s)	34
PleI	GAGTC	1 cut(s)	484
PmaCI	CACGTG	1 cut(s)	353
PmlI	CACGTG	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	484
Ppu21I	YACGTR	1 cut(s)	353
PsiI	TTATAA	1 cut(s)	723
PspCI	CACGTG	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	555, 872
PspPI	GGNCC	1 cut(s)	908
PsuI	RGATCY	1 cut(s)	870
PvuI	CGATCG	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	2 cut(s)	236, 1107
RsaNI	GTAC	2 cut(s)	235, 1106
SaqAI	TTAA	4 cut(s)	540, 636, 671, 704
Sau3AI	GATC	7 cut(s)	31, 247, 347, 514, 583, 870, 1026
Sau96I	GGNCC	1 cut(s)	908
ScaI	AGTACT	1 cut(s)	1107
SchI	GAGTC	1 cut(s)	485
SduI	GDGCHC	2 cut(s)	186, 358
SfaNI	GCATC	2 cut(s)	553, 988
SfcI	CTRYAG	1 cut(s)	1111
SinI	GGWCC	1 cut(s)	908
SphI	GCATGC	1 cut(s)	306
SsiI	CCGC	7 cut(s)	179, 195, 271, 276, 309, 1001, 1013
SspMI	CTAG	3 cut(s)	122, 681, 876
StyI	CCWWGG	3 cut(s)	78, 199, 1030
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	5 cut(s)	30, 360, 395, 570, 986
TatI	WGTACW	1 cut(s)	1105
TauI	GCSGC	3 cut(s)	197, 311, 1016
TfiI	GAWTC	2 cut(s)	902, 1129
Tru1I	TTAA	4 cut(s)	540, 636, 671, 704
Tru9I	TTAA	4 cut(s)	540, 636, 671, 704
TscAI	CASTG	1 cut(s)	486
TseFI	GTSAC	2 cut(s)	857, 1138
TseI	GCWGC	7 cut(s)	485, 488, 752, 818, 1016, 1073, 1147
Tsp45I	GTSAC	2 cut(s)	857, 1138
TspDTI	ATGAA	7 cut(s)	17, 74, 81, 548, 737, 843, 993
TspRI	CASTG	1 cut(s)	486
VpaK11BI	GGWCC	1 cut(s)	908
XapI	RAATTY	4 cut(s)	536, 667, 841, 1006
XbaI	TCTAGA	1 cut(s)	121
XceI	RCATGY	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	122, 681, 876
ZrmI	AGTACT	1 cut(s)	1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.