Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0029240

Physical Location & Seq

Genomic Coordinates Forward (+)

22574980 .. 22577275

Gene Structure 2296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCAGCTTCACATATCACCCAGCCTGAGGCATGTCACAGTGTTTCCGGGGAAAGGAGTTAGGGAGTTCATCAAGGTGAAAGTCGGGTCAAGGCGGCTTTCGTACCGGATGCTCTTCTACTCCATTCTGTTCTTCACTTTTCTTCTCAGGTTTGTGTTTGTGATGACTGTTGTGGATACCATTGACGGAGAAAGCAAGTGCTCTTCAATAGGTTGCTTGGGGAAAAGACTAGGACCAAAGATTTTGGGAAGAACAGAATCAAGGGTCCCAGAAGTAATATACCAAATATTAGAAGAACCCATCGGCAAGCATGAATTACAAGGAACGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0047262 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

111

Amino Acids

12.54

Weight (kDa)

9.86

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029240)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g16100 pycom11g20020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	94
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	27, 53
AgsI	TTSAA	1 cut(s)	207
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw21I	GWGCWC	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	4
AspS9I	GGNCC	2 cut(s)	233, 265
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	2 cut(s)	9, 88
AvaII	GGWCC	2 cut(s)	233, 265
AxyI	CCTNAGG	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	308
BciVI	GTATCC	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	2 cut(s)	5, 95
BlsI	GCNGC	2 cut(s)	6, 96
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	2 cut(s)	233, 265
BmgT120I	GGNCC	2 cut(s)	233, 265
BmiI	GGNNCC	2 cut(s)	266, 267
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 53
Bse21I	CCTNAGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	27, 53
BseMII	CTCAG	2 cut(s)	17, 160
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	47, 106
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	27, 53
BsmFI	GGGAC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	327
BspACI	CCGC	1 cut(s)	94
BspCNI	CTCAG	2 cut(s)	18, 159
BspLI	GGNNCC	2 cut(s)	266, 267
BspQI	GCTCTTC	2 cut(s)	119, 208
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	40, 169
Bst6I	CTCTTC	2 cut(s)	119, 208
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	2 cut(s)	26, 146
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	233, 265
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	32, 311
CviJI	RGCY	3 cut(s)	7, 24, 97
CviKI_1	RGCY	3 cut(s)	7, 24, 97
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	26, 146
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
Eam1104I	CTCTTC	2 cut(s)	119, 208
EarI	CTCTTC	2 cut(s)	119, 208
Eco47I	GGWCC	2 cut(s)	233, 265
Eco81I	CCTNAGG	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	265
FaeI	CATG	2 cut(s)	35, 314
FaiI	YATR	4 cut(s)	14, 33, 280, 312
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	2 cut(s)	31, 310
Fnu4HI	GCNGC	2 cut(s)	5, 95
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	5, 95
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	2 cut(s)	5, 95
GsaI	CCCAGC	1 cut(s)	24
HapII	CCGG	2 cut(s)	47, 106
Hin1II	CATG	2 cut(s)	35, 314
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	2 cut(s)	47, 106
HphI	GGTGA	2 cut(s)	9, 88
Hpy188I	TCNGA	1 cut(s)	332
HpyCH4III	ACNGT	2 cut(s)	40, 169
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	26, 146
Hsp92II	CATG	2 cut(s)	35, 314
KflI	GGGWCCC	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	327
LguI	GCTCTTC	2 cut(s)	119, 208
LpnPI	CCDG	6 cut(s)	34, 38, 60, 119, 133, 282
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	6 cut(s)	106, 124, 134, 195, 261, 305
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	1 cut(s)	314
MnlI	CCTC	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	74
MspI	CCGG	2 cut(s)	47, 106
MspR9I	CCNGG	1 cut(s)	48
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	2 cut(s)	35, 314
NlaIV	GGNNCC	2 cut(s)	266, 267
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	35
PciSI	GCTCTTC	2 cut(s)	119, 208
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	6, 96
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	266, 267
PspPI	GGNCC	2 cut(s)	233, 265
PspPPI	RGGWCCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	74
SapI	GCTCTTC	2 cut(s)	119, 208
SatI	GCNGC	2 cut(s)	5, 95
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	2 cut(s)	233, 265
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	4 cut(s)	9, 78, 152, 214
SfaNI	GCATC	1 cut(s)	99
SinI	GGWCC	2 cut(s)	233, 265
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	1 cut(s)	94
SspI	AATATT	1 cut(s)	288
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	40, 169
TasI	AATT	1 cut(s)	314
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	257
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	58, 327
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	45
VpaK11BI	GGWCC	2 cut(s)	233, 265
XceI	RCATGY	1 cut(s)	35
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.