Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0029398

Physical Location & Seq

Genomic Coordinates Forward (+)

24744737 .. 24745960

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAAAAGAGCTTCAATACTTTGGATTTTAACTAAAAACCATCTACAAACTTTATTTAATGGTAAGGACAACAAAAAGAAAAAAAAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAGCGCGTGCATATATTTGTGTAAATATATTATTGACTGTTTTCATTTTAAATTTGAATTGCCTACAGAATTGCCTCATGCATGTGAAGAGGATGAGGGTCGAGTTTTTCGTGCTCTTTGTACTGAAGACAAGGGGATTGGATTATCAGGCTATTCCCTAATTGAAGGAAGCAGCTGCACTTTAACGGCTCTACATTTCATCGCATTATTCCTATATAATTTCATGTATCAGGGTGGAGATTTCTCAAAAGGCAATGGGACTGGAGGAGAGTCGATTTATGGGGCGAAATTTGCAGATGAGAGCTTCAACTTGAAGCATGTCGGCCCTGGAATATATTCCATGGCAAATTCTAGACCTAATCCTAATGGTTCACAATTCTTCGGGCTGATTTGGTATTGCTGTGTTTTAAAAAAAAGCTGCTTCTGCTTGTTTGGTAAACTTTTTTGTAAAAGTGCTTTTGAAAAAAAAAAAAAAAGCAGTATTATAGTGTTTGGTAAACTTTTATGTAAAATAGATGTGAAAAAGCCGATTTTTCAAAGTTGGGTTTTGCAGCTTCTTTTATACCATTTCACTGCAATGACCCCGTGGCTTGAAGGAAAGCACGTTGTGTTCGAAACAATTGTTGATGGATACAGTCTTGTTGAGAAAATGAAGGTGGGTTCGAAGAGTGGGAAATTTTATAAACAGTGCACTATGAGTTCGTGCGTCAGACTTGTTGTTATTTTTATTAAAATTATGTCTTTTTCATTAAAATTTAAGTTCTTTTGTCCTTTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0023052 GO:0033218 GO:0036211 GO:0042221 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

304

Amino Acids

34.7

Weight (kDa)

9.66

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	114 - 191	2.1e-10	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029398)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g02700 pycom11g21670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	813
AccII	CGCG	1 cut(s)	137
AcsI	RAATTY	5 cut(s)	182, 419, 478, 806, 884
AcuI	CTGAAG	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	739
AfaI	GTAC	1 cut(s)	253
AgsI	TTSAA	8 cut(s)	15, 188, 296, 439, 445, 593, 668, 725
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	5 cut(s)	11, 306, 435, 549, 685
AluI	AGCT	5 cut(s)	11, 306, 435, 549, 685
Alw21I	GWGCWC	2 cut(s)	247, 824
Alw44I	GTGCAC	1 cut(s)	820
AoxI	GGCC	1 cut(s)	454
ApaLI	GTGCAC	1 cut(s)	820
ApeKI	GCWGC	4 cut(s)	303, 306, 549, 682
ApoI	RAATTY	5 cut(s)	182, 419, 478, 806, 884
Asp700I	GAANNNNTTC	1 cut(s)	466
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	455
AsuII	TTCGAA	2 cut(s)	744, 794
BaeGI	GKGCMC	1 cut(s)	824
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	2 cut(s)	247, 824
BbvI	GCAGC	4 cut(s)	293, 315, 536, 694
BccI	CCATC	2 cut(s)	48, 752
BceAI	ACGGC	1 cut(s)	333
BciT130I	CCWGG	1 cut(s)	459
BciVI	GTATCC	1 cut(s)	755
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	755
BisI	GCNGC	4 cut(s)	304, 307, 550, 683
BlsI	GCNGC	4 cut(s)	305, 308, 551, 684
Bme1390I	CCNGG	1 cut(s)	459
BmgT120I	GGNCC	1 cut(s)	455
BmrFI	CCNGG	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	414
Bpu14I	TTCGAA	2 cut(s)	744, 794
BsaJI	CCNNGG	3 cut(s)	457, 471, 716
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	2 cut(s)	391, 714
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	457, 471, 716
BseGI	GGATG	1 cut(s)	229
BseMI	GCAATG	2 cut(s)	391, 714
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	411
BseSI	GKGCMC	1 cut(s)	824
BseXI	GCAGC	4 cut(s)	293, 315, 536, 694
BsgI	GTGCAG	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	456
BsiHKAI	GWGCWC	2 cut(s)	247, 824
BslFI	GGGAC	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	456
Bsp119I	TTCGAA	2 cut(s)	744, 794
Bsp1286I	GDGCHC	2 cut(s)	247, 824
Bsp19I	CCATGG	1 cut(s)	471
BspANI	GGCC	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	137
BspT104I	TTCGAA	2 cut(s)	744, 794
BsrDI	GCAATG	2 cut(s)	391, 714
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	3 cut(s)	457, 471, 716
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	3 cut(s)	170, 767, 819
Bst6I	CTCTTC	2 cut(s)	213, 791
BstBI	TTCGAA	2 cut(s)	744, 794
BstC8I	GCNNGC	1 cut(s)	139
BstDSI	CCRYGG	2 cut(s)	471, 716
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 555
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	2 cut(s)	216, 452
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	824
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	4 cut(s)	293, 315, 536, 694
BstV2I	GAAGAC	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	755
BsuRI	GGCC	1 cut(s)	456
BtgI	CCRYGG	2 cut(s)	471, 716
BtgZI	GCGATG	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	2 cut(s)	702, 824
Cac8I	GCNNGC	1 cut(s)	139
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	455
CseI	GACGC	1 cut(s)	826
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	5 cut(s)	209, 213, 355, 449, 472
CviQI	GTAC	1 cut(s)	252
DraI	TTTAAA	2 cut(s)	181, 540
DraIII	CACNNNGTG	1 cut(s)	739
Eam1104I	CTCTTC	2 cut(s)	213, 791
EarI	CTCTTC	2 cut(s)	213, 791
Eco130I	CCWWGG	1 cut(s)	471
Eco57I	CTGAAG	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	471
EcoT22I	ATGCAT	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	5 cut(s)	212, 216, 358, 452, 475
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	5 cut(s)	208, 212, 354, 448, 471
Fnu4HI	GCNGC	4 cut(s)	304, 307, 550, 683
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	4 cut(s)	304, 307, 550, 683
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	4 cut(s)	304, 307, 550, 683
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	456
HgaI	GACGC	1 cut(s)	826
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	5 cut(s)	212, 216, 358, 452, 475
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	401
Hpy166II	GTNNAC	4 cut(s)	503, 569, 629, 822
Hpy188I	TCNGA	1 cut(s)	842
Hpy188III	TCNNGA	1 cut(s)	483
Hpy8I	GTNNAC	4 cut(s)	503, 569, 629, 822
HpyAV	CCTTC	3 cut(s)	290, 719, 778
HpyCH4III	ACNGT	3 cut(s)	170, 767, 819
HpyCH4IV	ACGT	1 cut(s)	735
HpyCH4V	TGCA	7 cut(s)	141, 212, 309, 425, 682, 707, 822
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 555
HpySE526I	ACGT	1 cut(s)	735
Hsp92II	CATG	5 cut(s)	212, 216, 358, 452, 475
HspAI	GCGC	1 cut(s)	135
LpnPI	CCDG	5 cut(s)	264, 347, 378, 444, 471
Lsp1109I	GCAGC	4 cut(s)	293, 315, 536, 694
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	1 cut(s)	735
MboII	GAAGA	4 cut(s)	230, 269, 502, 808
MfeI	CAATTG	1 cut(s)	750
MhlI	GDGCHC	2 cut(s)	247, 824
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	4 cut(s)	214, 216, 220, 389
Mph1103I	ATGCAT	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	466
MseI	TTAA	9 cut(s)	29, 57, 180, 314, 539, 861, 881, 888, 910
MslI	CAYNNNNRTG	2 cut(s)	213, 707
MspA1I	CMGCKG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	1 cut(s)	750
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	422, 555
NcoI	CCATGG	1 cut(s)	471
NlaIII	CATG	5 cut(s)	212, 216, 358, 452, 475
NsiI	ATGCAT	1 cut(s)	214
NspI	RCATGY	2 cut(s)	216, 452
NspV	TTCGAA	2 cut(s)	744, 794
PcsI	WCGNNNNNNNCGW	2 cut(s)	238, 741
PdmI	GAANNNNTTC	1 cut(s)	466
PkrI	GCNGC	4 cut(s)	305, 308, 551, 684
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PsiI	TTATAA	1 cut(s)	813
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspPI	GGNCC	1 cut(s)	455
PvuII	CAGCTG	1 cut(s)	306
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
RseI	CAYNNNNRTG	2 cut(s)	213, 707
SaqAI	TTAA	9 cut(s)	29, 57, 180, 314, 539, 861, 881, 888, 910
SatI	GCNGC	4 cut(s)	304, 307, 550, 683
Sau96I	GGNCC	1 cut(s)	455
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	2 cut(s)	247, 824
SetI	ASST	8 cut(s)	13, 308, 437, 490, 551, 687, 738, 789
SfcI	CTRYAG	1 cut(s)	195
SfuI	TTCGAA	2 cut(s)	744, 794
SmiMI	CAYNNNNRTG	2 cut(s)	213, 707
SspMI	CTAG	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	3 cut(s)	170, 767, 819
TaiI	ACGT	1 cut(s)	738
TaqI	TCGA	4 cut(s)	232, 404, 744, 794
TatI	WGTACW	1 cut(s)	251
Tru1I	TTAA	9 cut(s)	29, 57, 180, 314, 539, 861, 881, 888, 910
Tru9I	TTAA	9 cut(s)	29, 57, 180, 314, 539, 861, 881, 888, 910
TscAI	CASTG	2 cut(s)	709, 824
TseI	GCWGC	4 cut(s)	303, 306, 549, 682
TspDTI	ATGAA	6 cut(s)	17, 164, 319, 343, 797, 867
TspRI	CASTG	2 cut(s)	709, 824
VneI	GTGCAC	1 cut(s)	820
XapI	RAATTY	5 cut(s)	182, 419, 478, 806, 884
XbaI	TCTAGA	1 cut(s)	482
XceI	RCATGY	2 cut(s)	216, 452
XmnI	GAANNNNTTC	1 cut(s)	466
XspI	CTAG	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.