pycom11g21740

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0021209
Physical Location & Seq
Reverse (-)
24799658 .. 24800677
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1020 bp
ATGCAGAAGATGGGAGAGTTGGGCTATGTTTCCACTCTCACCTACAATGACATTATGTGTCTATATACGCATACAGGCCAGCCCGAGAAAATCCCTGATGTGATGTTTGAGATGAAGGAGAAGGGTGTTTCTCCTGACAGTTTTAGCTACAGGATTTGCATGAGCTCTTATGGGGCGAGGTCTGATCTAAGCGGCATGGAGAAAGTTTTGGAAGAAATGGAGAGCCAACCGCACATCTCCATGGATTGGATTACTTATGCTATGGTAGCCAATTTATACATAAAAGCAGGTCTGCCCGACAAAGCGTTGGTCTACCTGGGAAAGAGTGAAGAGAAGGTGAATAAAGATGCACTTGGATACAACCATCTGATTACTCTTTATGCAAGCCTTGGATATAAAGATCATATGATGAGGTTGTGGAACCTCGAAAAAGCCAAGTGCAAAAAGCAAATCAACCGGGACTATATAACCATGCTTGGTTCTCTTGTGAAGCTTGGTGAGCTTGAAGAAACTAAAAAATTGCTAGAGGAGTGGGAATCATCTTGTCACTGTTATGATTTTCGAGTGCCAAATGTCCTCCTGATCGGATATTGTCAAAAGGGATTGGTTGAACAAGCGGAAGAAACTCTTCGAGACATTGTCAAAAGAGGCAAGACTCCAATCCCAAATAGCTGGTCTATTCTTGCTGCAGGGTATGTGGACAAGCAGAAGATGCAGAAGGCTTTTGAGTGCATGATGGAAGCTCTGCATGTACGGGCAAATAACACAGGATGGAATCCGAAATCTGGTTTGGTTTCAAATGTATTGAATTGGATTGGAGATAACGGAGACATTGAACAAGTAGAAGCTTTTGTGACCTTAATGAAGACTGTGATTCCAGTAAATAGTGAAATGTACCATGCCTTAATGAAGGCATACATCAGAAGCGGGAAAGAAGTAGAAGGGCTATTACAGAGCATGAAAGAAGATCAAATAGAGACCGATGAGGAAATCGATAGGTTAAGACAGACGCAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

340

Amino Acids

38.77

Weight (kDa)

5.54

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 11 - 56 2.7e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021209)

Species Orthologous Gene IDs
malus_domestica MD11G1245200.v1.1
prunus_persica Prupe.4G183500_v2.0.a1 Prupe.4G183500_v2.0.a1 Prupe.4G183500_v2.0.a1
pyrus_communis pycom11g21740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 246
AccI GTMKAC 1 cut(s) 312
AciI CCGC 4 cut(s) 192, 230, 617, 927
AfaI GTAC 2 cut(s) 753, 896
AfiI CCNNNNNNNGG 2 cut(s) 246, 785
AgsI TTSAA 5 cut(s) 506, 611, 798, 808, 836
AjnI CCWGG 1 cut(s) 315
AjuI GAANNNNNNNTTGG 2 cut(s) 773, 805
AluBI AGCT 7 cut(s) 147, 165, 493, 502, 672, 743, 848
AluI AGCT 7 cut(s) 147, 165, 493, 502, 672, 743, 848
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 3 cut(s) 627, 822, 971
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 686
ArsI GACNNNNNNTTYG 4 cut(s) 294, 326, 659, 691
Asp700I GAANNNNTTC 1 cut(s) 627
AsuC2I CCSGG 1 cut(s) 458
AsuHPI GGTGA 3 cut(s) 31, 349, 509
AvaI CYCGRG 1 cut(s) 83
BanII GRGCYC 1 cut(s) 167
BarI GAAGNNNNNNTAC 2 cut(s) 933, 965
BbsI GAAGAC 1 cut(s) 872
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 673
BccI CCATC 4 cut(s) 4, 372, 730, 765
BciT130I CCWGG 1 cut(s) 317
BciVI GTATCC 1 cut(s) 350
BcnI CCSGG 1 cut(s) 458
BcoDI GTCTC 3 cut(s) 627, 822, 971
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 2 cut(s) 148, 687
BfuAI ACCTGC 1 cut(s) 278
BfuI GTATCC 1 cut(s) 350
BisI GCNGC 2 cut(s) 193, 687
BlsI GCNGC 2 cut(s) 194, 688
Bme1390I CCNGG 2 cut(s) 317, 458
BmeT110I CYCGRG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 422
BmrFI CCNGG 2 cut(s) 317, 458
BmsI GCATC 2 cut(s) 337, 702
BpiI GAAGAC 1 cut(s) 872
BpuMI CCSGG 1 cut(s) 458
Bsa29I ATCGAT 1 cut(s) 993
BsaI GGTCTC 1 cut(s) 971
BsaJI CCNNGG 3 cut(s) 240, 316, 388
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 785
Bse1I ACTGG 1 cut(s) 878
Bse3DI GCAATG 1 cut(s) 1019
BseBI CCWGG 1 cut(s) 317
BseCI ATCGAT 1 cut(s) 993
BseDI CCNNGG 3 cut(s) 240, 316, 388
BseGI GGATG 1 cut(s) 776
BseLI CCNNNNNNNGG 2 cut(s) 246, 785
BseMI GCAATG 1 cut(s) 1019
BseNI ACTGG 1 cut(s) 878
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 1 cut(s) 673
BshFI GGCC 1 cut(s) 78
BshVI ATCGAT 1 cut(s) 993
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 457
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 2 cut(s) 246, 785
BsmAI GTCTC 3 cut(s) 627, 822, 971
BsmFI GGGAC 1 cut(s) 473
BsnI GGCC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 971
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 4 cut(s) 184, 400, 582, 967
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 4 cut(s) 192, 230, 617, 927
BspANI GGCC 1 cut(s) 78
BspDI ATCGAT 1 cut(s) 993
BspLI GGNNCC 1 cut(s) 422
BspMAI CTGCAG 1 cut(s) 691
BspMI ACCTGC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 971
BsrDI GCAATG 1 cut(s) 1019
BsrI ACTGG 1 cut(s) 878
BssECI CCNNGG 3 cut(s) 240, 316, 388
BssMI GATC 4 cut(s) 184, 400, 582, 967
BssT1I CCWWGG 2 cut(s) 240, 388
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 3 cut(s) 140, 551, 871
Bst6I CTCTTC 2 cut(s) 324, 633
BstAPI GCANNNNNTGC 1 cut(s) 712
BstC8I GCNNGC 2 cut(s) 80, 385
BstDEI CTNAG 1 cut(s) 188
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 776
BstKTI GATC 4 cut(s) 187, 403, 585, 970
BstMAI GTCTC 3 cut(s) 627, 822, 971
BstMBI GATC 4 cut(s) 184, 400, 582, 967
BstMWI GCNNNNNNNGC 3 cut(s) 266, 499, 712
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 752
BstSCI CCNGG 2 cut(s) 315, 456
BstSFI CTRYAG 2 cut(s) 148, 687
BstV1I GCAGC 1 cut(s) 673
BstV2I GAAGAC 1 cut(s) 872
BstXI CCANNNNNNTGG 1 cut(s) 672
Bsu15I ATCGAT 1 cut(s) 993
BsuI GTATCC 1 cut(s) 350
BsuRI GGCC 1 cut(s) 78
BsuTUI ATCGAT 1 cut(s) 993
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 776
BtsIMutI CAGTG 1 cut(s) 547
BveI ACCTGC 1 cut(s) 278
Cac8I GCNNGC 2 cut(s) 80, 385
ClaI ATCGAT 1 cut(s) 993
Csp6I GTAC 2 cut(s) 752, 895
CviAII CATG 8 cut(s) 160, 196, 241, 472, 733, 749, 899, 958
CviQI GTAC 2 cut(s) 752, 895
DdeI CTNAG 1 cut(s) 188
DpnI GATC 4 cut(s) 186, 402, 584, 969
DpnII GATC 4 cut(s) 184, 400, 582, 967
Eam1104I CTCTTC 2 cut(s) 324, 633
EarI CTCTTC 2 cut(s) 324, 633
Ecl136II GAGCTC 1 cut(s) 165
Eco130I CCWWGG 2 cut(s) 240, 388
Eco24I GRGCYC 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 971
Eco53kI GAGCTC 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 2 cut(s) 240, 388
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 2 cut(s) 240, 388
FaeI CATG 8 cut(s) 163, 199, 244, 475, 736, 752, 902, 961
FalI AAGNNNNNCTT 4 cut(s) 336, 368, 612, 644
FaqI GGGAC 1 cut(s) 473
FatI CATG 8 cut(s) 159, 195, 240, 471, 732, 748, 898, 957
FauI CCCGC 1 cut(s) 920
FauNDI CATATG 1 cut(s) 405
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 193, 687
FokI GGATG 1 cut(s) 783
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 193, 687
FspBI CTAG 1 cut(s) 524
GluI GCNGC 2 cut(s) 193, 687
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 457
Hin1II CATG 8 cut(s) 163, 199, 244, 475, 736, 752, 902, 961
HindIII AAGCTT 2 cut(s) 491, 846
HinfI GANTC 4 cut(s) 536, 655, 775, 874
HpaII CCGG 1 cut(s) 457
HphI GGTGA 3 cut(s) 31, 349, 509
Hpy166II GTNNAC 2 cut(s) 313, 700
Hpy188I TCNGA 5 cut(s) 184, 369, 587, 780, 923
Hpy188III TCNNGA 3 cut(s) 134, 580, 632
Hpy8I GTNNAC 2 cut(s) 313, 700
HpyAV CCTTC 6 cut(s) 109, 115, 328, 712, 904, 935
HpyCH4III ACNGT 3 cut(s) 140, 551, 871
HpyCH4V TGCA 9 cut(s) 4, 159, 350, 383, 441, 689, 715, 732, 748
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 499, 712
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 8 cut(s) 163, 199, 244, 475, 736, 752, 902, 961
Kzo9I GATC 4 cut(s) 184, 400, 582, 967
Lsp1109I GCAGC 1 cut(s) 673
LweI GCATC 2 cut(s) 337, 702
MaeI CTAG 1 cut(s) 524
MaeIII GTNAC 2 cut(s) 545, 853
MalI GATC 4 cut(s) 186, 402, 584, 969
MboI GATC 4 cut(s) 184, 400, 582, 967
MboII GAAGA 9 cut(s) 19, 224, 341, 518, 620, 632, 721, 877, 977
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 3 cut(s) 271, 518, 808
MlyI GAGTC 1 cut(s) 649
MnlI CCTC 7 cut(s) 171, 405, 434, 520, 587, 641, 979
MroXI GAANNNNTTC 1 cut(s) 627
MseI TTAA 3 cut(s) 860, 905, 1001
MslI CAYNNNNRTG 2 cut(s) 239, 552
MspI CCGG 1 cut(s) 457
MspR9I CCNGG 2 cut(s) 317, 458
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 3 cut(s) 266, 499, 712
NciI CCSGG 1 cut(s) 458
NcoI CCATGG 1 cut(s) 240
NdeI CATATG 1 cut(s) 405
NdeII GATC 4 cut(s) 184, 400, 582, 967
NlaIII CATG 8 cut(s) 163, 199, 244, 475, 736, 752, 902, 961
NlaIV GGNNCC 1 cut(s) 422
NmuCI GTSAC 2 cut(s) 545, 853
NspI RCATGY 1 cut(s) 752
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 3 cut(s) 536, 775, 874
PflFI GACNNNGTC 1 cut(s) 638
PflMI CCANNNNNTGG 1 cut(s) 246
PkrI GCNGC 2 cut(s) 194, 688
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
Psp124BI GAGCTC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 422
PstI CTGCAG 1 cut(s) 691
PsyI GACNNNGTC 1 cut(s) 638
RsaI GTAC 2 cut(s) 753, 896
RsaNI GTAC 2 cut(s) 752, 895
RseI CAYNNNNRTG 2 cut(s) 239, 552
SacI GAGCTC 1 cut(s) 167
SaqAI TTAA 3 cut(s) 860, 905, 1001
SatI GCNGC 2 cut(s) 193, 687
Sau3AI GATC 4 cut(s) 184, 400, 582, 967
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 2 cut(s) 317, 458
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 2 cut(s) 337, 702
SfcI CTRYAG 2 cut(s) 148, 687
SmiMI CAYNNNNRTG 2 cut(s) 239, 552
Sse9I AATT 3 cut(s) 271, 518, 808
SsiI CCGC 4 cut(s) 192, 230, 617, 927
SspMI CTAG 1 cut(s) 524
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 315, 456
StyI CCWWGG 2 cut(s) 240, 388
TaaI ACNGT 3 cut(s) 140, 551, 871
TaqI TCGA 4 cut(s) 426, 562, 631, 993
TaqII GACCGA 1 cut(s) 995
TasI AATT 3 cut(s) 271, 518, 808
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 3 cut(s) 536, 775, 874
Tru1I TTAA 3 cut(s) 860, 905, 1001
Tru9I TTAA 3 cut(s) 860, 905, 1001
TscAI CASTG 1 cut(s) 554
TseFI GTSAC 2 cut(s) 545, 853
TseI GCWGC 1 cut(s) 686
Tsp45I GTSAC 2 cut(s) 545, 853
TspDTI ATGAA 4 cut(s) 128, 878, 923, 974
TspGWI ACGGA 1 cut(s) 840
TspRI CASTG 1 cut(s) 554
Tth111I GACNNNGTC 1 cut(s) 638
Van91I CCANNNNNTGG 1 cut(s) 246
XceI RCATGY 1 cut(s) 752
XmiI GTMKAC 1 cut(s) 312
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.