pycom11g23800

Class II Aldolase and Adducin N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0029409
Physical Location & Seq
Reverse (-)
26801187 .. 26806272
5086 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 201 bp
ATGGTAGCAGTGGCAGTGAACGGACTGAAACTTGGTACGACGTCGCATGCCTACTTGGAAGGCAAAACAGTGAGCGACACCAAGGTTCTGATATCCGACCTCTGCCGCCAGTTCTACAATCTCGGATGGGTCTCAGGGACCGGTGCAACATCACAATCAAAGTGCATGACGACCCTATTCCTAAGCCCGAGCAGCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldolase_II

Protein Analysis

67

Amino Acids

6.96

Weight (kDa)

8.74

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029409)

Species Orthologous Gene IDs
pyrus_communis pycom11g23800
rosa_multiflora Rmu_co8266769.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
AciI CCGC 1 cut(s) 106
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 1 cut(s) 37
AgeI ACCGGT 1 cut(s) 140
AluBI AGCT 1 cut(s) 195
AluI AGCT 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 192
AsiGI ACCGGT 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 1 cut(s) 138
BccI CCATC 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 136
BisI GCNGC 2 cut(s) 106, 193
BlsI GCNGC 2 cut(s) 107, 194
Bme18I GGWCC 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 109
BshTI ACCGGT 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 151
Bso31I GGTCTC 1 cut(s) 136
BsoBI CYCGRG 1 cut(s) 187
BspACI CCGC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 139
BspTNI GGTCTC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 81
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 133, 182
BstF5I GGATG 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 50
BtsCI GGATG 1 cut(s) 131
BtsI GCAGTG 2 cut(s) 15, 21
BtsIMutI CAGTG 3 cut(s) 15, 21, 75
Cac8I GCNNGC 1 cut(s) 48
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 36
CspAI ACCGGT 1 cut(s) 140
CviAII CATG 2 cut(s) 47, 166
CviJI RGCY 2 cut(s) 186, 195
CviKI_1 RGCY 2 cut(s) 186, 195
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 2 cut(s) 133, 182
Eco130I CCWWGG 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 136
Eco32I GATATC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 187
EcoRV GATATC 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 2 cut(s) 50, 169
FaiI YATR 2 cut(s) 48, 167
FaqI GGGAC 1 cut(s) 151
FatI CATG 2 cut(s) 46, 165
Fnu4HI GCNGC 2 cut(s) 106, 193
FokI GGATG 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 106, 193
GluI GCNGC 2 cut(s) 106, 193
HapII CCGG 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 50, 169
HpaII CCGG 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 90, 97, 125
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 2 cut(s) 43, 46
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 146, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 2 cut(s) 133, 182
HpySE526I ACGT 1 cut(s) 41
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 50, 169
LpnPI CCDG 3 cut(s) 120, 122, 154
MaeII ACGT 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 1 cut(s) 110
MspI CCGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 192
NlaIII CATG 2 cut(s) 50, 169
NlaIV GGNNCC 1 cut(s) 139
NspI RCATGY 1 cut(s) 50
PaeI GCATGC 1 cut(s) 50
PinAI ACCGGT 1 cut(s) 140
PkrI GCNGC 2 cut(s) 107, 194
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 138
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SatI GCNGC 2 cut(s) 106, 193
Sau96I GGNCC 1 cut(s) 138
SetI ASST 4 cut(s) 44, 87, 102, 197
SgeI CNNG 9 cut(s) 44, 59, 67, 94, 121, 134, 147, 153, 178
SinI GGWCC 1 cut(s) 138
SphI GCATGC 1 cut(s) 50
SsiI CCGC 1 cut(s) 106
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 44
TauI GCSGC 1 cut(s) 108
TscAI CASTG 3 cut(s) 15, 21, 75
TseI GCWGC 1 cut(s) 192
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 3 cut(s) 15, 21, 75
VpaK11BI GGWCC 1 cut(s) 138
XceI RCATGY 1 cut(s) 50
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.