Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8266769.1

Orthogroup ID

OG0029409

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 719

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8266769.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 217 bp

atggcagcagtggcactgaacggagtgaagctcggaacgacgtcgcaggcttacttggaaagccaaccagtcaacgacaccaaggttctgatatccgacctgtgccgccagttctacaacctgggatgggtgtcggggaccggtggaagcatcacaatcaaagtccacgatgagtctgttcctaagcctcagcaactcgtcatcatgtctccctctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

Aldolase_II Hydrolase

Protein Analysis

72

Amino Acids

7.69

Weight (kDa)

6.52

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029409)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g23800
rosa_multiflora	Rmu_co8266769.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	44
AciI	CCGC	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgeI	ACCGGT	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	213
BisI	GCNGC	2 cut(s)	6, 106
BlsI	GCNGC	2 cut(s)	7, 107
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	15, 47
Bpu10I	CCTNAGC	2 cut(s)	183, 189
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	81, 121
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	68, 109
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	81, 121
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	2 cut(s)	68, 109
BseXI	GCAGC	1 cut(s)	17
BshTI	ACCGGT	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	68, 109
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	81, 121
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	183, 189
BstF5I	GGATG	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	14, 15
Cac8I	GCNNGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	138
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	4 cut(s)	31, 50, 63, 187
CviKI_1	RGCY	4 cut(s)	31, 50, 63, 187
DdeI	CTNAG	2 cut(s)	183, 189
Eco130I	CCWWGG	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	120
EcoRV	GATATC	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	1 cut(s)	208
FaiI	YATR	1 cut(s)	206
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	6, 106
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	6, 106
GluI	GCNGC	2 cut(s)	6, 106
HapII	CCGG	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	2 cut(s)	73, 166
Hpy188I	TCNGA	3 cut(s)	35, 90, 97
Hpy8I	GTNNAC	2 cut(s)	73, 166
Hpy99I	CGWCG	2 cut(s)	43, 46
HpyCH4IV	ACGT	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	183, 189
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	208
LpnPI	CCDG	7 cut(s)	32, 81, 107, 113, 122, 134, 154
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	159
MaeII	ACGT	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	1 cut(s)	198
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	139
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	7, 107
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	138
SatI	GCNGC	2 cut(s)	6, 106
Sau96I	GGNCC	1 cut(s)	138
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	5 cut(s)	33, 44, 87, 102, 123
SfaNI	GCATC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	138
SsiI	CCGC	1 cut(s)	106
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	81
TaiI	ACGT	1 cut(s)	44
TauI	GCSGC	1 cut(s)	108
TscAI	CASTG	2 cut(s)	15, 21
TseI	GCWGC	1 cut(s)	5
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	2 cut(s)	15, 21
VpaK11BI	GGWCC	1 cut(s)	138
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.