Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0027660

Physical Location & Seq

Genomic Coordinates Forward (+)

28172660 .. 28172997

Gene Structure 338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g25350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGTTGCGGATGGCTCTTTCACAATCTTCTTTCAAGGTAAGCGGGGCCTGGTTCTGCTGCACAGCATTCAGCTTCATAGACATGCTATGCAGGTAGATACGTTGCACGTATTGCCTTCCCTAGCTGTAAAGACAGAGTTGGATAGCAACATTTTCCGTATTGGCCTTCTCTTGATCAATGACAACAGGAGCACAGCAAGATATATACGCAGAAATCATCTGGGATGGTATGCGTGCACTGGATTGACAATGGTTAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006996 GO:0007033 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009825 GO:0009845 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010154 GO:0016043 GO:0016049 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032989 GO:0032991 GO:0033554 GO:0033962 GO:0033993 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051049 GO:0051716 GO:0060341 GO:0061458 GO:0065003 GO:0065007 GO:0070925 GO:0071214 GO:0071470 GO:0071472 GO:0071826 GO:0071840 GO:0080001 GO:0090351 GO:0090558 GO:0090626 GO:0097305 GO:0104004 GO:1901700 GO:1903335 GO:1904580 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach Laminin_G_3 PH_BEACH WD40

Protein Analysis

88

Amino Acids

9.88

Weight (kDa)

10.16

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23831
pyrus_communis	pycom11g25350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	82
AciI	CCGC	2 cut(s)	8, 43
AgsI	TTSAA	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	2 cut(s)	73, 125
AluI	AGCT	2 cut(s)	73, 125
Alw21I	GWGCWC	2 cut(s)	194, 239
Alw44I	GTGCAC	1 cut(s)	235
AoxI	GGCC	2 cut(s)	46, 163
ApaLI	GTGCAC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	239
Bbv12I	GWGCWC	2 cut(s)	194, 239
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	2 cut(s)	5, 219
BciT130I	CCWGG	1 cut(s)	50
BclI	TGATCA	1 cut(s)	174
BfaI	CTAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	50
BseGI	GGATG	2 cut(s)	16, 230
BseNI	ACTGG	1 cut(s)	244
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	48, 165
BsiHKAI	GWGCWC	2 cut(s)	194, 239
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	48, 165
Bsp1286I	GDGCHC	2 cut(s)	194, 239
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	2 cut(s)	8, 43
BspANI	GGCC	2 cut(s)	48, 165
BspLI	GGNNCC	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	244
BssMI	GATC	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	16, 230
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	48, 165
BtsCI	GGATG	2 cut(s)	16, 230
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	46
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	5 cut(s)	15, 48, 73, 125, 165
CviKI_1	RGCY	5 cut(s)	15, 48, 73, 125, 165
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	86
FaiI	YATR	6 cut(s)	78, 84, 89, 204, 206, 231
FatI	CATG	1 cut(s)	82
FauI	CCCGC	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	2 cut(s)	23, 237
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	48, 165
Hin1II	CATG	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	2 cut(s)	126, 176
HpyCH4IV	ACGT	2 cut(s)	101, 108
HpyCH4V	TGCA	4 cut(s)	61, 91, 106, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpySE526I	ACGT	2 cut(s)	101, 108
Hsp92II	CATG	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	6 cut(s)	35, 62, 77, 172, 206, 225
Lsp1109I	GCAGC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	2 cut(s)	101, 108
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	194, 239
MmeI	TCCRAC	1 cut(s)	120
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	112
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	1 cut(s)	47
NspI	RCATGY	1 cut(s)	86
PctI	GAATGC	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	60
Ppu21I	YACGTR	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	2 cut(s)	194, 239
SetI	ASST	6 cut(s)	40, 75, 96, 104, 111, 127
SmiMI	CAYNNNNRTG	1 cut(s)	81
SsiI	CCGC	2 cut(s)	8, 43
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	48
TaiI	ACGT	2 cut(s)	104, 111
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	244
VneI	GTGCAC	1 cut(s)	235
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.