Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0028918

Physical Location & Seq

Genomic Coordinates Forward (+)

28247706 .. 28248098

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGAAGACTCTCGCCGAGCTCAAGCTCCTCCACAATTACCAGGTCAAGCATCTGGGTCCGCAGGCCCAGATCTTGGCTGTCGGGCTCTCGTCGAGGAAGAATCTGTGTGTTAATTCGACGGTGTTGGCGGCGGAGAATCGGGATTCTGTGGATGCGGCTTGCCGGAAATTGACTGCCAGCTGGGTCAGGAACTTGGCGGCGGAAAACCCAAACGTGCCAACTTTTGAGTTTTATGAGGAGTATGAGAAAGCTGGGTCTGGAGCTGTTTTGCCTCCTGGGGTTTATACATTGCAAGTATTGCTGAATTGGGTTTTTGATAAATTTTGTTTCTTTGAATTGGGTTTTGAAAATTTTGTTTCTTTGTTATGTTTTCGATCCGGATTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

DEAD_2 HBB Helicase_C_2

Protein Analysis

131

Amino Acids

14.56

Weight (kDa)

5.7

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD_2	PF06733	1 - 101	1.1e-11	DEAD_2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0028918)

Species	Orthologous Gene IDs
malus_domestica	MD11G1286700.v1.1
pyrus_communis	pycom11g25420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	380
AciI	CCGC	6 cut(s)	62, 131, 134, 158, 200, 203
AclWI	GGATC	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	323, 352
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	338, 350
AjnI	CCWGG	2 cut(s)	42, 277
AluBI	AGCT	5 cut(s)	22, 28, 183, 254, 266
AluI	AGCT	5 cut(s)	22, 28, 183, 254, 266
Alw21I	GWGCWC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	372
Aor13HI	TCCGGA	1 cut(s)	380
AoxI	GGCC	1 cut(s)	66
ApoI	RAATTY	2 cut(s)	323, 352
AspS9I	GGNCC	2 cut(s)	59, 67
AvaII	GGWCC	1 cut(s)	59
BanII	GRGCYC	2 cut(s)	24, 90
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	44, 279
BglII	AGATCT	1 cut(s)	72
BisI	GCNGC	3 cut(s)	132, 159, 201
BlsI	GCNGC	3 cut(s)	133, 160, 202
Bme1390I	CCNGG	2 cut(s)	44, 279
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	59, 67
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	2 cut(s)	44, 279
BmsI	GCATC	2 cut(s)	61, 145
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	290
BseAI	TCCGGA	1 cut(s)	380
BseBI	CCWGG	2 cut(s)	44, 279
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	290
BseRI	GAGGAG	2 cut(s)	20, 254
BseYI	CCCAGC	2 cut(s)	183, 254
BshFI	GGCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	166, 381
BslI	CCNNNNNNNGG	1 cut(s)	76
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	24, 90
Bsp13I	TCCGGA	1 cut(s)	380
Bsp143I	GATC	2 cut(s)	72, 377
BspACI	CCGC	6 cut(s)	62, 131, 134, 158, 200, 203
BspANI	GGCC	1 cut(s)	68
BspEI	TCCGGA	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	2 cut(s)	72, 377
Bst2UI	CCWGG	2 cut(s)	44, 279
Bst4CI	ACNGT	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstC8I	GCNNGC	3 cut(s)	66, 163, 181
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	2 cut(s)	75, 380
BstMBI	GATC	2 cut(s)	72, 377
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	2 cut(s)	44, 279
BstSCI	CCNGG	2 cut(s)	42, 277
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	3 cut(s)	66, 163, 181
Cfr13I	GGNCC	2 cut(s)	59, 67
CsiI	ACCWGGT	1 cut(s)	42
CviJI	RGCY	9 cut(s)	22, 28, 68, 80, 88, 161, 183, 254, 266
CviKI_1	RGCY	9 cut(s)	22, 28, 68, 80, 88, 161, 183, 254, 266
DpnI	GATC	2 cut(s)	74, 379
DpnII	GATC	2 cut(s)	72, 377
EciI	GGCGGA	2 cut(s)	149, 218
Ecl136II	GAGCTC	1 cut(s)	22
Eco24I	GRGCYC	2 cut(s)	24, 90
Eco47I	GGWCC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	42, 277
EcoT38I	GRGCYC	2 cut(s)	24, 90
FaiI	YATR	4 cut(s)	237, 246, 288, 370
Fnu4HI	GCNGC	3 cut(s)	132, 159, 201
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	2 cut(s)	24, 90
Fsp4HI	GCNGC	3 cut(s)	132, 159, 201
GluI	GCNGC	3 cut(s)	132, 159, 201
GsaI	CCCAGC	2 cut(s)	187, 258
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	2 cut(s)	166, 381
HinfI	GANTC	4 cut(s)	10, 103, 139, 146
HpaII	CCGG	2 cut(s)	166, 381
Hpy188III	TCNNGA	4 cut(s)	143, 190, 261, 381
Hpy99I	CGWCG	2 cut(s)	97, 124
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpySE526I	ACGT	1 cut(s)	216
Kpn2I	TCCGGA	1 cut(s)	380
Kzo9I	GATC	2 cut(s)	72, 377
LmnI	GCTCC	2 cut(s)	33, 263
LweI	GCATC	2 cut(s)	61, 145
MabI	ACCWGGT	1 cut(s)	42
MaeII	ACGT	1 cut(s)	216
MalI	GATC	2 cut(s)	74, 379
MboI	GATC	2 cut(s)	72, 377
MboII	GAAGA	2 cut(s)	19, 112
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	2 cut(s)	24, 90
MluCI	AATT	7 cut(s)	37, 115, 170, 307, 323, 338, 352
MlyI	GAGTC	1 cut(s)	4
MnlI	CCTC	4 cut(s)	41, 90, 232, 285
MroI	TCCGGA	1 cut(s)	380
MseI	TTAA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	2 cut(s)	166, 381
MspR9I	CCNGG	2 cut(s)	44, 279
MvaI	CCWGG	2 cut(s)	44, 279
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeII	GATC	2 cut(s)	72, 377
NlaIV	GGNNCC	1 cut(s)	60
NmeAIII	GCCGAG	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	103, 139, 146
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	133, 160, 202
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	42, 277
PspFI	CCCAGC	2 cut(s)	183, 254
PspGI	CCWGG	2 cut(s)	42, 277
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	2 cut(s)	59, 67
PsuI	RGATCY	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	3 cut(s)	132, 159, 201
Sau3AI	GATC	2 cut(s)	72, 377
Sau96I	GGNCC	2 cut(s)	59, 67
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	44, 279
SduI	GDGCHC	2 cut(s)	24, 90
SetI	ASST	7 cut(s)	24, 30, 48, 185, 219, 256, 268
SexAI	ACCWGGT	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	61, 145
SinI	GGWCC	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	7 cut(s)	37, 115, 170, 307, 323, 338, 352
SsiI	CCGC	6 cut(s)	62, 131, 134, 158, 200, 203
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	42, 277
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	95, 119, 376
TasI	AATT	7 cut(s)	37, 115, 170, 307, 323, 338, 352
TauI	GCSGC	3 cut(s)	134, 161, 203
TfiI	GAWTC	3 cut(s)	103, 139, 146
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	2 cut(s)	323, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.