pycom11g27430

Vacuolar protein sorting-associated protein 51 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
29678877 .. 29680039
1163 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGTCTGATCCTACCGGCTTCTACTCCCCTGACCCTTCGATGTCGTTTCCCAACTCTAAGTCCTCGTCCAAGTACGCCACTCTCGACTCCACCTCCTTCGATCCTGACCAAATGAAAAGTAATATTGTGGGCATGGAGGCAAATATGGAACAGCTCCTTGAGAAGATAATGTCTGTGCGATCTAGAAGTGGTGGGGTTAACACTTGTCTTTTTGAGAAGAGGGAACACATAGAAAAGTTGCATCGCACACGCAACCTTCTCCCTAAAATTCAGGTTGTTAGCAATGTATATGTGACTTTATGA

Protein Analysis

101

Amino Acids

11.28

Weight (kDa)

7.88

Isoelectric Point (pI)

68.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0028904)

Species Orthologous Gene IDs
malus_domestica MD11G1314200.v1.1
pyrus_communis pycom11g27430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 2, 95
AcsI RAATTY 1 cut(s) 267
AfaI GTAC 1 cut(s) 74
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
AlwI GGATC 2 cut(s) 2, 95
ApoI RAATTY 1 cut(s) 267
BfaI CTAG 1 cut(s) 183
BmsI GCATC 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bse118I RCCGGY 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 289
BseMI GCAATG 1 cut(s) 289
BsiSI CCGG 1 cut(s) 15
Bsp143I GATC 3 cut(s) 7, 100, 179
BspPI GGATC 2 cut(s) 2, 95
BsrDI GCAATG 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssMI GATC 3 cut(s) 7, 100, 179
Bst6I CTCTTC 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 57
BstKTI GATC 3 cut(s) 10, 103, 182
BstMBI GATC 3 cut(s) 7, 100, 179
BtgZI GCGATG 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 14
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 133
CviJI RGCY 2 cut(s) 18, 154
CviKI_1 RGCY 2 cut(s) 18, 154
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 1 cut(s) 57
DpnI GATC 3 cut(s) 9, 102, 181
DpnII GATC 3 cut(s) 7, 100, 179
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
FaeI CATG 1 cut(s) 136
FaiI YATR 6 cut(s) 134, 146, 230, 289, 291, 301
FatI CATG 1 cut(s) 132
FspBI CTAG 1 cut(s) 183
HapII CCGG 1 cut(s) 15
Hin1II CATG 1 cut(s) 136
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 1 cut(s) 86
HpaI GTTAAC 1 cut(s) 199
HpaII CCGG 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 3 cut(s) 83, 104, 183
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 3 cut(s) 45, 106, 266
HpyCH4V TGCA 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 7, 100, 179
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 4 cut(s) 28, 42, 117, 257
LweI GCATC 1 cut(s) 250
MaeI CTAG 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 292
MalI GATC 3 cut(s) 9, 102, 181
MboI GATC 3 cut(s) 7, 100, 179
MboII GAAGA 2 cut(s) 175, 229
MluCI AATT 1 cut(s) 267
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 4 cut(s) 73, 103, 130, 213
MseI TTAA 1 cut(s) 198
MspI CCGG 1 cut(s) 15
NdeII GATC 3 cut(s) 7, 100, 179
NlaIII CATG 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SaqAI TTAA 1 cut(s) 198
Sau3AI GATC 3 cut(s) 7, 100, 179
SchI GAGTC 1 cut(s) 80
SetI ASST 4 cut(s) 95, 156, 258, 276
SfaNI GCATC 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 267
SspI AATATT 1 cut(s) 124
SspMI CTAG 1 cut(s) 183
TaqI TCGA 3 cut(s) 38, 84, 99
TasI AATT 1 cut(s) 267
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 128
XapI RAATTY 1 cut(s) 267
XbaI TCTAGA 1 cut(s) 182
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.