Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012480

Orthogroup ID

OG0029414

Physical Location & Seq

Genomic Coordinates Forward (+)

19770 .. 21169

Gene Structure 1400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12480g00020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGTCCTCTTCTAACTCGATGAAAATCTCGCCGTTGGATCTGATGGCGGCGATTATCAAGGGCAAGATGGACCCCGCCGACTTCCCCGGTGCCCAAGTCACCTCAGTCATTCTCGAGAACCGCGAGTTCGTCATGATCTTGACCACCTCCATTGCTGTCCTCATCGGCTGCGTCGTCGTTTTGGTCTTGCGGCGATCCAGTGCCCAGAAGCAGCCCGGCGTCATCCAGCCGCCTAGGCCCCTGATCGTGGAGGAGCCAGAGCCGGAGGAGGCTGACAACGGCAGCAAGAAGGTCACCATCTTCTTCGGCACTCAGACTGGCACCGCCGAAGGCTTCGCCAAGGTCAACTTTTACAACAACACTATTTCAATTACAAATTTCAATCAAATATATTTTCTGTTTAGCTCGCTTCGTTGCTTCGATTTTACGTGTTCGATTCGTTGCCTCAGTGTTTCTTTTGGTTCAAAAAATTCTGTTTTCTGTTGCGTTGTTGATCTTATTTTTATTGGTGATAATCAGGTTGCCATGGTTGTGGATGAGATCCTCGGTGCACAGGGTACGCCTTCATTGCGTTTTTTTTGCTTTCATGTTATTTGGGTACTTAGTTTGTTCCTTTCTGATGAAATCGCATCGGTGTGGGACCATTTGCATTCTGAGACGATTCACATTGCTATGATGTTACTTTATTCTCGATCAGATTTGGTTTTTGCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

240

Amino Acids

26.44

Weight (kDa)

5.05

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029414)

Species	Orthologous Gene IDs
pyrus_communis	pycom12480g00020 pycom16g22460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	92, 323
AccII	CGCG	1 cut(s)	126
AciI	CCGC	6 cut(s)	50, 78, 124, 193, 233, 327
AclWI	GGATC	3 cut(s)	48, 192, 538
AcsI	RAATTY	2 cut(s)	379, 472
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	562, 603
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	372, 385, 468
AluBI	AGCT	1 cut(s)	408
AluI	AGCT	1 cut(s)	408
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	1 cut(s)	653
Alw44I	GTGCAC	1 cut(s)	552
AlwI	GGATC	3 cut(s)	48, 192, 538
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	1 cut(s)	239
ApaLI	GTGCAC	1 cut(s)	552
ApeKI	GCWGC	3 cut(s)	171, 214, 285
ApoI	RAATTY	2 cut(s)	379, 472
AspA2I	CCTAGG	1 cut(s)	236
AspS9I	GGNCC	3 cut(s)	73, 240, 643
AsuC2I	CCSGG	2 cut(s)	90, 219
AsuHPI	GGTGA	3 cut(s)	94, 289, 524
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	2 cut(s)	73, 643
AvrII	CCTAGG	1 cut(s)	236
BaeGI	GKGCMC	3 cut(s)	97, 208, 556
BanI	GGYRCC	2 cut(s)	92, 323
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	3 cut(s)	158, 226, 297
BccI	CCATC	3 cut(s)	40, 64, 308
BceAI	ACGGC	2 cut(s)	19, 298
BcnI	CCSGG	2 cut(s)	90, 219
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	1 cut(s)	237
BglI	GCCNNNNNGGC	1 cut(s)	238
BisI	GCNGC	6 cut(s)	51, 172, 194, 215, 233, 286
BlnI	CCTAGG	1 cut(s)	236
BlsI	GCNGC	6 cut(s)	52, 173, 195, 216, 234, 287
Bme1390I	CCNGG	2 cut(s)	90, 219
Bme18I	GGWCC	2 cut(s)	73, 643
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	3 cut(s)	73, 240, 643
BmiI	GGNNCC	6 cut(s)	75, 94, 242, 258, 325, 644
BmrFI	CCNGG	2 cut(s)	90, 219
BmsI	GCATC	1 cut(s)	641
BpuMI	CCSGG	2 cut(s)	90, 219
BsaAI	YACGTR	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	5 cut(s)	88, 236, 342, 528, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	2 cut(s)	201, 325
Bse3DI	GCAATG	3 cut(s)	153, 569, 669
Bse8I	GATNNNNATC	1 cut(s)	26
BseDI	CCNNGG	5 cut(s)	88, 236, 342, 528, 547
BseGI	GGATG	2 cut(s)	225, 544
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	3 cut(s)	153, 569, 669
BseMII	CTCAG	4 cut(s)	120, 329, 463, 648
BseNI	ACTGG	2 cut(s)	201, 325
BseRI	GAGGAG	2 cut(s)	269, 284
BseSI	GKGCMC	3 cut(s)	97, 208, 556
BseXI	GCAGC	3 cut(s)	158, 226, 297
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	241
BshNI	GGYRCC	2 cut(s)	92, 323
BsiHKAI	GWGCWC	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	90, 219, 266
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	653
BsmBI	CGTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	656
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	3 cut(s)	97, 208, 556
Bsp143I	GATC	7 cut(s)	40, 138, 197, 246, 496, 543, 695
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	6 cut(s)	50, 78, 124, 193, 233, 327
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	4 cut(s)	119, 328, 462, 649
BspFNI	CGCG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	6 cut(s)	75, 94, 242, 258, 325, 644
BspPI	GGATC	3 cut(s)	48, 192, 538
BspT107I	GGYRCC	2 cut(s)	92, 323
BsrDI	GCAATG	3 cut(s)	153, 569, 669
BsrI	ACTGG	2 cut(s)	201, 325
BssECI	CCNNGG	5 cut(s)	88, 236, 342, 528, 547
BssMI	GATC	7 cut(s)	40, 138, 197, 246, 496, 543, 695
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	3 cut(s)	236, 342, 528
Bst6I	CTCTTC	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	432
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	5 cut(s)	106, 315, 449, 605, 657
BstDSI	CCRYGG	1 cut(s)	528
BstEII	GGTNACC	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	225, 544
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	7 cut(s)	43, 141, 200, 249, 499, 546, 698
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	7 cut(s)	40, 138, 197, 246, 496, 543, 695
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 571
BstPI	GGTNACC	1 cut(s)	295
BstSCI	CCNGG	2 cut(s)	88, 217
BstSLI	GKGCMC	3 cut(s)	97, 208, 556
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	3 cut(s)	158, 226, 297
BstX2I	RGATCY	2 cut(s)	40, 543
BstXI	CCANNNNNNTGG	1 cut(s)	535
BstYI	RGATCY	2 cut(s)	40, 543
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	225, 544
BtsIMutI	CAGTG	2 cut(s)	208, 457
Cac8I	GCNNGC	1 cut(s)	410
CciI	TCATGA	1 cut(s)	135
Cfr13I	GGNCC	3 cut(s)	73, 240, 643
CseI	GACGC	2 cut(s)	163, 211
Csp6I	GTAC	2 cut(s)	561, 602
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	3 cut(s)	136, 529, 590
CviJI	RGCY	9 cut(s)	171, 217, 232, 241, 259, 265, 275, 336, 408
CviKI_1	RGCY	9 cut(s)	171, 217, 232, 241, 259, 265, 275, 336, 408
CviQI	GTAC	2 cut(s)	561, 602
DdeI	CTNAG	5 cut(s)	106, 315, 449, 605, 657
DpnI	GATC	7 cut(s)	42, 140, 199, 248, 498, 545, 697
DpnII	GATC	7 cut(s)	40, 138, 197, 246, 496, 543, 695
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	3 cut(s)	236, 342, 528
Eco47I	GGWCC	2 cut(s)	73, 643
Eco88I	CYCGRG	1 cut(s)	116
Eco91I	GGTNACC	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	240
EcoO65I	GGTNACC	1 cut(s)	295
EcoT14I	CCWWGG	3 cut(s)	236, 342, 528
ErhI	CCWWGG	3 cut(s)	236, 342, 528
Esp3I	CGTCTC	1 cut(s)	653
FaeI	CATG	3 cut(s)	139, 532, 593
FaiI	YATR	5 cut(s)	137, 394, 530, 591, 677
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	3 cut(s)	135, 528, 589
FauI	CCCGC	1 cut(s)	85
Fnu4HI	GCNGC	6 cut(s)	51, 172, 194, 215, 233, 286
FokI	GGATG	2 cut(s)	212, 551
Fsp4HI	GCNGC	6 cut(s)	51, 172, 194, 215, 233, 286
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	6 cut(s)	51, 172, 194, 215, 233, 286
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	3 cut(s)	90, 219, 266
HgaI	GACGC	2 cut(s)	163, 211
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	139, 532, 593
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	5, 439, 664
HpaII	CCGG	3 cut(s)	90, 219, 266
HphI	GGTGA	3 cut(s)	94, 289, 524
Hpy166II	GTNNAC	2 cut(s)	349, 554
Hpy188I	TCNGA	5 cut(s)	45, 318, 622, 658, 700
Hpy188III	TCNNGA	5 cut(s)	116, 118, 136, 142, 693
Hpy8I	GTNNAC	2 cut(s)	349, 554
Hpy99I	CGWCG	2 cut(s)	179, 182
HpyAV	CCTTC	3 cut(s)	286, 326, 576
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	3 cut(s)	554, 652, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 571
HpyF3I	CTNAG	5 cut(s)	106, 315, 449, 605, 657
HpySE526I	ACGT	1 cut(s)	431
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	139, 532, 593
Kzo9I	GATC	7 cut(s)	40, 138, 197, 246, 496, 543, 695
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	3 cut(s)	158, 226, 297
LweI	GCATC	1 cut(s)	641
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	3 cut(s)	100, 295, 681
MalI	GATC	7 cut(s)	42, 140, 199, 248, 498, 545, 697
MboI	GATC	7 cut(s)	40, 138, 197, 246, 496, 543, 695
MboII	GAAGA	3 cut(s)	3, 295, 298
MflI	RGATCY	2 cut(s)	40, 543
MhlI	GDGCHC	3 cut(s)	97, 208, 556
MluCI	AATT	3 cut(s)	372, 379, 472
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	9 cut(s)	19, 115, 160, 173, 247, 262, 265, 458, 557
MslI	CAYNNNNRTG	3 cut(s)	533, 637, 674
MspI	CCGG	3 cut(s)	90, 219, 266
MspR9I	CCNGG	2 cut(s)	90, 219
Mva1269I	GAATGC	1 cut(s)	652
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	238, 571
NciI	CCSGG	2 cut(s)	90, 219
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	7 cut(s)	40, 138, 197, 246, 496, 543, 695
NlaIII	CATG	3 cut(s)	139, 532, 593
NlaIV	GGNNCC	6 cut(s)	75, 94, 242, 258, 325, 644
NmuCI	GTSAC	2 cut(s)	100, 295
PaeR7I	CTCGAG	1 cut(s)	116
PagI	TCATGA	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 174
PctI	GAATGC	1 cut(s)	652
PfeI	GAWTC	2 cut(s)	439, 664
PkrI	GCNGC	6 cut(s)	52, 173, 195, 216, 234, 287
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	432
PspEI	GGTNACC	1 cut(s)	295
PspN4I	GGNNCC	6 cut(s)	75, 94, 242, 258, 325, 644
PspPI	GGNCC	3 cut(s)	73, 240, 643
PsuI	RGATCY	2 cut(s)	40, 543
RsaI	GTAC	2 cut(s)	562, 603
RsaNI	GTAC	2 cut(s)	561, 602
RseI	CAYNNNNRTG	3 cut(s)	533, 637, 674
SatI	GCNGC	6 cut(s)	51, 172, 194, 215, 233, 286
Sau3AI	GATC	7 cut(s)	40, 138, 197, 246, 496, 543, 695
Sau96I	GGNCC	3 cut(s)	73, 240, 643
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	90, 219
SduI	GDGCHC	3 cut(s)	97, 208, 556
SetI	ASST	7 cut(s)	107, 152, 297, 348, 410, 434, 525
SfaNI	GCATC	1 cut(s)	641
Sfr274I	CTCGAG	1 cut(s)	116
SinI	GGWCC	2 cut(s)	73, 643
SlaI	CTCGAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	3 cut(s)	533, 637, 674
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	3 cut(s)	372, 379, 472
SsiI	CCGC	6 cut(s)	50, 78, 124, 193, 233, 327
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	88, 217
StyI	CCWWGG	3 cut(s)	236, 342, 528
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	5 cut(s)	20, 117, 423, 437, 694
TasI	AATT	3 cut(s)	372, 379, 472
TauI	GCSGC	3 cut(s)	53, 196, 235
TfiI	GAWTC	2 cut(s)	439, 664
TscAI	CASTG	2 cut(s)	208, 457
TseFI	GTSAC	2 cut(s)	100, 295
TseI	GCWGC	3 cut(s)	171, 214, 285
Tsp45I	GTSAC	2 cut(s)	100, 295
TspDTI	ATGAA	4 cut(s)	38, 558, 578, 639
TspRI	CASTG	2 cut(s)	208, 457
VneI	GTGCAC	1 cut(s)	552
VpaK11BI	GGWCC	2 cut(s)	73, 643
XapI	RAATTY	2 cut(s)	379, 472
XhoI	CTCGAG	1 cut(s)	116
XmaJI	CCTAGG	1 cut(s)	236
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.