pycom12g10310

Protein SHOOT GRAVITROPISM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0029426
Physical Location & Seq
Reverse (-)
12268007 .. 12268876
870 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGGACTCCTTCCCTTGTTCAACATGCATTCTTTCAATCATCGATCATCGAACTGACTACGAGGGTTTTGTCAGAGACCTCACAAAGCAATTTGTTCAGCATCATCCCTTAAGACTTGATACTTACATGGCATCTACAATACAGGCTTTCGATGCACCATGGCCGATAATTCAGGCTAATGCTATATACTTCTCCAGCTGTATGCTATCTCTGTCCGATGATCAGCACATCTTGAATCAATATTATGCGCAGGTATTCGAAACGCTAGTAGGAAAAATGAGTAAGTCAGCAGATGCAGTCGTGAGAGCTACGTGCTCTTCTGCTCTGGGTTTATTATTAAAATTCTCAAAGTCATCCTCATGGAAATCAGCTCGAGTTGATCGTACGGACTCAAGTCACTCAATACGAAAGGGCCATGATTTTTCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cnd1

Protein Analysis

144

Amino Acids

16.1

Weight (kDa)

7.0

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_MROH2B_C PF23227 14 - 112 2.1e-08 MROH2B-like, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029426)

Species Orthologous Gene IDs
pyrus_communis pycom12g10310
rosa_multiflora Rmu_co8329367.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 241
AcoI YGGCCR 1 cut(s) 161
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 1 cut(s) 385
AflII CTTAAG 1 cut(s) 109
AgsI TTSAA 3 cut(s) 21, 36, 235
AluBI AGCT 3 cut(s) 198, 308, 371
AluI AGCT 3 cut(s) 198, 308, 371
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 372
AoxI GGCC 2 cut(s) 161, 412
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 412
AsuII TTCGAA 1 cut(s) 258
AvaI CYCGRG 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 317
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 266, 430
BfrI CTTAAG 1 cut(s) 109
BfuAI ACCTGC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 412
BmsI GCATC 4 cut(s) 109, 140, 142, 283
BoxI GACNNNNGTC 1 cut(s) 393
BpmI CTGGAG 1 cut(s) 178
Bpu14I TTCGAA 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 376
Bsa29I ATCGAT 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 2 cut(s) 103, 353
BshFI GGCC 2 cut(s) 163, 414
BshVI ATCGAT 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 372
BsiWI CGTACG 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 27
BsnI GGCC 2 cut(s) 163, 414
Bso31I GGTCTC 1 cut(s) 69
BsoBI CYCGRG 1 cut(s) 372
Bsp119I TTCGAA 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 3 cut(s) 43, 220, 379
Bsp19I CCATGG 1 cut(s) 158
BspANI GGCC 2 cut(s) 163, 414
BspDI ATCGAT 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 241
BspQI GCTCTTC 1 cut(s) 322
BspT104I TTCGAA 1 cut(s) 258
BspTI CTTAAG 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 3 cut(s) 43, 220, 379
BssT1I CCWWGG 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 322
BstAFI CTTAAG 1 cut(s) 109
BstBAI YACGTR 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 103, 353
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 3 cut(s) 46, 223, 382
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 3 cut(s) 43, 220, 379
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 27
BstPAI GACNNNNGTC 1 cut(s) 393
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 2 cut(s) 163, 414
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 158
BtsCI GGATG 2 cut(s) 103, 353
BveI ACCTGC 1 cut(s) 241
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 412
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 1 cut(s) 384
CviAII CATG 5 cut(s) 24, 127, 159, 360, 416
CviJI RGCY 7 cut(s) 146, 163, 176, 198, 308, 371, 414
CviKI_1 RGCY 7 cut(s) 146, 163, 176, 198, 308, 371, 414
CviQI GTAC 1 cut(s) 384
DpnI GATC 3 cut(s) 45, 222, 381
DpnII GATC 3 cut(s) 43, 220, 379
EaeI YGGCCR 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 5 cut(s) 27, 130, 162, 363, 419
FaiI YATR 9 cut(s) 25, 128, 160, 185, 187, 203, 246, 361, 417
FatI CATG 5 cut(s) 23, 126, 158, 359, 415
FbaI TGATCA 1 cut(s) 220
FokI GGATG 2 cut(s) 90, 340
FspBI CTAG 2 cut(s) 266, 430
FspI TGCGCA 1 cut(s) 249
GlaI GCGC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 2 cut(s) 163, 414
HhaI GCGC 1 cut(s) 250
Hin1II CATG 5 cut(s) 27, 130, 162, 363, 419
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 3 cut(s) 5, 235, 389
Hpy188I TCNGA 2 cut(s) 74, 217
Hpy188III TCNNGA 2 cut(s) 232, 301
HpyAV CCTTC 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 3 cut(s) 27, 155, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 5 cut(s) 27, 130, 162, 363, 419
HspAI GCGC 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 43, 220, 379
LguI GCTCTTC 1 cut(s) 322
LpnPI CCDG 5 cut(s) 128, 158, 208, 236, 311
LweI GCATC 4 cut(s) 109, 140, 142, 283
MaeI CTAG 2 cut(s) 266, 430
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 395
MalI GATC 3 cut(s) 45, 222, 381
MboI GATC 3 cut(s) 43, 220, 379
MboII GAAGA 1 cut(s) 309
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 3 cut(s) 89, 168, 341
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 3 cut(s) 55, 89, 367
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 2 cut(s) 110, 338
MslI CAYNNNNRTG 1 cut(s) 358
MspA1I CMGCKG 1 cut(s) 198
MspCI CTTAAG 1 cut(s) 109
Mva1269I GAATGC 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 158
NdeII GATC 3 cut(s) 43, 220, 379
NlaIII CATG 5 cut(s) 27, 130, 162, 363, 419
NmuCI GTSAC 1 cut(s) 395
NsbI TGCGCA 1 cut(s) 249
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 1 cut(s) 27
NspV TTCGAA 1 cut(s) 258
PaeR7I CTCGAG 1 cut(s) 372
PciSI GCTCTTC 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 379
PctI GAATGC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 235
Pfl23II CGTACG 1 cut(s) 383
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
Ppu21I YACGTR 1 cut(s) 312
PshAI GACNNNNGTC 1 cut(s) 393
PspLI CGTACG 1 cut(s) 383
PspPI GGNCC 1 cut(s) 412
PspXI VCTCGAGB 1 cut(s) 372
PvuII CAGCTG 1 cut(s) 198
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
RseI CAYNNNNRTG 1 cut(s) 358
SapI GCTCTTC 1 cut(s) 322
SaqAI TTAA 2 cut(s) 110, 338
Sau3AI GATC 3 cut(s) 43, 220, 379
Sau96I GGNCC 1 cut(s) 412
SchI GAGTC 1 cut(s) 383
SduI GDGCHC 1 cut(s) 317
SetI ASST 6 cut(s) 81, 200, 255, 310, 314, 373
SfaNI GCATC 4 cut(s) 109, 140, 142, 283
Sfr274I CTCGAG 1 cut(s) 372
SfuI TTCGAA 1 cut(s) 258
SlaI CTCGAG 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 358
SmlI CTYRAG 3 cut(s) 109, 372, 391
SmoI CTYRAG 3 cut(s) 109, 372, 391
Sse9I AATT 3 cut(s) 89, 168, 341
SspI AATATT 1 cut(s) 242
SspMI CTAG 2 cut(s) 266, 430
StyI CCWWGG 1 cut(s) 158
TaiI ACGT 1 cut(s) 314
TaqI TCGA 5 cut(s) 42, 49, 150, 258, 373
TasI AATT 3 cut(s) 89, 168, 341
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 2 cut(s) 110, 338
Tru9I TTAA 2 cut(s) 110, 338
TseFI GTSAC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 395
TspGWI ACGGA 1 cut(s) 401
Vha464I CTTAAG 1 cut(s) 109
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 27
XhoI CTCGAG 1 cut(s) 372
XspI CTAG 2 cut(s) 266, 430
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.