Rmu_co8329367.1_g000001

Protein SHOOT GRAVITROPISM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8329367.1
OG0029426
Physical Location & Seq
Reverse (-)
187 .. 547
361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8329367.1_g000001.1.cds

Sequence Viewer

Length: 279 bp
atgacttatcttacattcttgatgtggcaggctttagacgcaccttggccaataattcaggcaaatgctatatacttctccagctgtatgctatctctgtcagatgatcagcacattttgactctctattatccacaggtatttggaccattagtaggaaaattgagcaagtcagcagatgcaagcgttagagcaacatgctcttccgcccttggtttgctgttaaaatcctcaaagtcaatatcatggaaagcagctagagcggatcgcgtggagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cnd1

Protein Analysis

92

Amino Acids

10.16

Weight (kDa)

8.66

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029426)

Species Orthologous Gene IDs
pyrus_communis pycom12g10310
rosa_multiflora Rmu_co8329367.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 263
AccII CGCG 1 cut(s) 270
AciI CCGC 2 cut(s) 207, 263
AclWI GGATC 1 cut(s) 273
AcoI YGGCCR 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 155
AluBI AGCT 2 cut(s) 84, 257
AluI AGCT 2 cut(s) 84, 257
AlwI GGATC 1 cut(s) 273
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 146
AvaII GGWCC 1 cut(s) 146
BalI TGGCCA 1 cut(s) 49
BbvI GCAGC 1 cut(s) 266
BclI TGATCA 1 cut(s) 106
BfaI CTAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmsI GCATC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 44, 211
Bsc4I CCNNNNNNNGG 1 cut(s) 155
BseDI CCNNGG 2 cut(s) 44, 211
BseLI CCNNNNNNNGG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 155
BsnI GGCC 1 cut(s) 49
Bsp143I GATC 2 cut(s) 106, 265
BspACI CCGC 2 cut(s) 207, 263
BspANI GGCC 1 cut(s) 49
BspFNI CGCG 1 cut(s) 270
BspPI GGATC 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 208
BsrBI CCGCTC 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 44, 211
BssMI GATC 2 cut(s) 106, 265
BssT1I CCWWGG 2 cut(s) 44, 211
Bst6I CTCTTC 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 30, 184
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 2 cut(s) 109, 268
BstMBI GATC 2 cut(s) 106, 265
BstMWI GCNNNNNNNGC 2 cut(s) 38, 260
BstNSI RCATGY 1 cut(s) 201
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 49
Cac8I GCNNGC 2 cut(s) 30, 184
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 1 cut(s) 47
CviAII CATG 2 cut(s) 198, 246
CviJI RGCY 4 cut(s) 32, 49, 84, 257
CviKI_1 RGCY 4 cut(s) 32, 49, 84, 257
DpnI GATC 2 cut(s) 108, 267
DpnII GATC 2 cut(s) 106, 265
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
EciI GGCGGA 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 44, 211
Eco47I GGWCC 1 cut(s) 146
EcoT14I CCWWGG 2 cut(s) 44, 211
ErhI CCWWGG 2 cut(s) 44, 211
FaeI CATG 2 cut(s) 201, 249
FaiI YATR 5 cut(s) 71, 73, 89, 199, 247
FatI CATG 2 cut(s) 197, 245
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 1 cut(s) 49
HgaI GACGC 1 cut(s) 47
Hin1II CATG 2 cut(s) 201, 249
HinfI GANTC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 260
Hsp92II CATG 2 cut(s) 201, 249
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 106, 265
LguI GCTCTTC 1 cut(s) 208
LpnPI CCDG 4 cut(s) 14, 44, 94, 122
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 258
MalI GATC 2 cut(s) 108, 267
MbiI CCGCTC 1 cut(s) 263
MboI GATC 2 cut(s) 106, 265
MboII GAAGA 1 cut(s) 195
MlsI TGGCCA 1 cut(s) 49
MluCI AATT 2 cut(s) 54, 161
MluNI TGGCCA 1 cut(s) 49
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 1 cut(s) 241
Mox20I TGGCCA 1 cut(s) 49
MscI TGGCCA 1 cut(s) 49
MseI TTAA 1 cut(s) 224
Msp20I TGGCCA 1 cut(s) 49
MspA1I CMGCKG 1 cut(s) 84
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 38, 260
NdeII GATC 2 cut(s) 106, 265
NlaIII CATG 2 cut(s) 201, 249
NspI RCATGY 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 208
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 2 cut(s) 106, 265
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 1 cut(s) 115
SetI ASST 4 cut(s) 46, 86, 141, 259
SfaNI GCATC 1 cut(s) 169
SinI GGWCC 1 cut(s) 146
Sse9I AATT 2 cut(s) 54, 161
SsiI CCGC 2 cut(s) 207, 263
SspMI CTAG 1 cut(s) 258
StyI CCWWGG 2 cut(s) 44, 211
TasI AATT 2 cut(s) 54, 161
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TseI GCWGC 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 146
XceI RCATGY 1 cut(s) 201
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.