pycom12g11670

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0029428
Physical Location & Seq
Reverse (-)
14024537 .. 14025174
638 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
ATGTTACTAAATTCGAGAGCACATCCTTGGCTTACAGATGCTGACAGGGAGCAGCTCTGCAGACTAATGAACTGCCAGAAGCTTTCGCTGGAAGCGAGCACCCATGCAGCTCAGAACGAGAGGTTACCACTTCGAGTAATTGTTCAAGTCCTCTTCTTTGAACAGCTTCAACTGCGTACGTCAATTTCTGGCTGGTTCTTTGTTGACAATCTTGAGAACTCACAAAATCCAAGCGGAAACCTTGGGCTCCCCCCCAAAAATGCTGTGTCCGGTCAAGTGGACACTGCAGAAGACCAAGCTGTGGGTGTCGATCATCACGACATGAGGAAACGCGTTTTAGAGCTTCAAAAGGAGTGTTCAAGCATGAAAAAGGAGCTGCAGAAGCTGGTCAAGACCAAGAGAAGTTGGAGCATCCTTCCCAAAAGGTTAGGTTTTAGAAAAAAGTTGGAGCCTTGCAATCCAAAAGAATCGAAGCCCTCTGATCGGATTCCGGTACCAGCATCATGCTGCAATGGACAACGAACTCATGAAAACAGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

181

Amino Acids

20.53

Weight (kDa)

9.23

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 7 - 33 5.6e-09 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029428)

Species Orthologous Gene IDs
pyrus_communis pycom12g11670
rosa_multiflora Rmu_sc0010644.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 493
AccB7I CCANNNNNTGG 1 cut(s) 301
AccII CGCG 1 cut(s) 333
AciI CCGC 1 cut(s) 234
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 2 cut(s) 178, 495
AfiI CCNNNNNNNGG 2 cut(s) 301, 483
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 5 cut(s) 146, 161, 170, 347, 360
AluBI AGCT 9 cut(s) 55, 82, 110, 166, 299, 343, 376, 385, 537
AluI AGCT 9 cut(s) 55, 82, 110, 166, 299, 343, 376, 385, 537
Alw21I GWGCWC 2 cut(s) 22, 101
AlwNI CAGNNNCTG 2 cut(s) 41, 385
ApeKI GCWGC 4 cut(s) 52, 107, 376, 507
ApoI RAATTY 1 cut(s) 10
Asp700I GAANNNNTTC 1 cut(s) 165
Asp718I GGTACC 1 cut(s) 493
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 2 cut(s) 22, 101
BbvI GCAGC 4 cut(s) 64, 119, 363, 494
BfmI CTRYAG 3 cut(s) 58, 285, 377
BisI GCNGC 4 cut(s) 53, 108, 377, 508
BlsI GCNGC 4 cut(s) 54, 109, 378, 509
BmiI GGNNCC 3 cut(s) 248, 450, 495
BmsI GCATC 3 cut(s) 28, 420, 509
BpiI GAAGAC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 26, 241
BsaWI WCCGGW 2 cut(s) 269, 490
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 483
Bse3DI GCAATG 1 cut(s) 517
BseDI CCNNGG 2 cut(s) 26, 241
BseGI GGATG 2 cut(s) 22, 411
BseLI CCNNNNNNNGG 2 cut(s) 301, 483
BseMI GCAATG 1 cut(s) 517
BseMII CTCAG 1 cut(s) 125
BseXI GCAGC 4 cut(s) 64, 119, 363, 494
Bsh1236I CGCG 1 cut(s) 333
BshNI GGYRCC 1 cut(s) 493
BsiHKAI GWGCWC 2 cut(s) 22, 101
BsiSI CCGG 2 cut(s) 270, 491
BsiWI CGTACG 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 301, 483
Bsp1286I GDGCHC 3 cut(s) 22, 101, 249
Bsp143I GATC 2 cut(s) 310, 481
BspACI CCGC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 1 cut(s) 333
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 3 cut(s) 248, 450, 495
BspMAI CTGCAG 3 cut(s) 62, 289, 381
BspT107I GGYRCC 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 517
BssECI CCNNGG 2 cut(s) 26, 241
BssMI GATC 2 cut(s) 310, 481
BssT1I CCWWGG 2 cut(s) 26, 241
Bst6I CTCTTC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 111
BstEII GGTNACC 1 cut(s) 123
BstF5I GGATG 2 cut(s) 22, 411
BstFNI CGCG 1 cut(s) 333
BstKTI GATC 2 cut(s) 313, 484
BstMBI GATC 2 cut(s) 310, 481
BstMWI GCNNNNNNNGC 2 cut(s) 172, 382
BstPI GGTNACC 1 cut(s) 123
BstSFI CTRYAG 3 cut(s) 58, 285, 377
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 4 cut(s) 64, 119, 363, 494
BstV2I GAAGAC 1 cut(s) 297
BtsCI GGATG 2 cut(s) 22, 411
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 97
CaiI CAGNNNCTG 2 cut(s) 41, 385
CciI TCATGA 1 cut(s) 526
Csp6I GTAC 2 cut(s) 177, 494
CviAII CATG 5 cut(s) 104, 322, 364, 504, 527
CviQI GTAC 2 cut(s) 177, 494
DdeI CTNAG 1 cut(s) 111
DpnI GATC 2 cut(s) 312, 483
DpnII GATC 2 cut(s) 310, 481
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco130I CCWWGG 2 cut(s) 26, 241
Eco24I GRGCYC 1 cut(s) 249
Eco91I GGTNACC 1 cut(s) 123
EcoO65I GGTNACC 1 cut(s) 123
EcoT14I CCWWGG 2 cut(s) 26, 241
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 2 cut(s) 26, 241
FaeI CATG 5 cut(s) 107, 325, 367, 507, 530
FaiI YATR 5 cut(s) 105, 323, 365, 505, 528
FatI CATG 5 cut(s) 103, 321, 363, 503, 526
Fnu4HI GCNGC 4 cut(s) 53, 108, 377, 508
FokI GGATG 2 cut(s) 9, 398
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 4 cut(s) 53, 108, 377, 508
GluI GCNGC 4 cut(s) 53, 108, 377, 508
HapII CCGG 2 cut(s) 270, 491
Hin1II CATG 5 cut(s) 107, 325, 367, 507, 530
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 2 cut(s) 467, 487
HpaII CCGG 2 cut(s) 270, 491
Hpy166II GTNNAC 2 cut(s) 205, 280
Hpy188I TCNGA 3 cut(s) 114, 481, 486
Hpy188III TCNNGA 5 cut(s) 15, 212, 317, 391, 527
Hpy8I GTNNAC 2 cut(s) 205, 280
HpyAV CCTTC 1 cut(s) 425
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 6 cut(s) 60, 107, 287, 379, 456, 510
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 382
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 5 cut(s) 107, 325, 367, 507, 530
KpnI GGTACC 1 cut(s) 497
Kzo9I GATC 2 cut(s) 310, 481
LmnI GCTCC 5 cut(s) 49, 252, 373, 408, 448
LpnPI CCDG 9 cut(s) 31, 74, 89, 174, 178, 283, 371, 504, 510
Lsp1109I GCAGC 4 cut(s) 64, 119, 363, 494
LweI GCATC 3 cut(s) 28, 420, 509
MaeII ACGT 1 cut(s) 179
MaeIII GTNAC 2 cut(s) 3, 123
MalI GATC 2 cut(s) 312, 483
MboI GATC 2 cut(s) 310, 481
MboII GAAGA 2 cut(s) 145, 302
MhlI GDGCHC 3 cut(s) 22, 101, 249
MluCI AATT 3 cut(s) 10, 138, 183
MluI ACGCGT 1 cut(s) 331
MmeI TCCRAC 2 cut(s) 386, 426
MnlI CCTC 4 cut(s) 114, 161, 318, 487
MroXI GAANNNNTTC 1 cut(s) 165
MspI CCGG 2 cut(s) 270, 491
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 172, 382
NdeII GATC 2 cut(s) 310, 481
NlaIII CATG 5 cut(s) 107, 325, 367, 507, 530
NlaIV GGNNCC 3 cut(s) 248, 450, 495
PagI TCATGA 1 cut(s) 526
PcsI WCGNNNNNNNCGW 2 cut(s) 92, 315
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 2 cut(s) 467, 487
Pfl23II CGTACG 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 4 cut(s) 54, 109, 378, 509
PspEI GGTNACC 1 cut(s) 123
PspLI CGTACG 1 cut(s) 176
PspN4I GGNNCC 3 cut(s) 248, 450, 495
PstI CTGCAG 3 cut(s) 62, 289, 381
PstNI CAGNNNCTG 2 cut(s) 41, 385
RsaI GTAC 2 cut(s) 178, 495
RsaNI GTAC 2 cut(s) 177, 494
SatI GCNGC 4 cut(s) 53, 108, 377, 508
Sau3AI GATC 2 cut(s) 310, 481
SduI GDGCHC 3 cut(s) 22, 101, 249
SfaNI GCATC 3 cut(s) 28, 420, 509
SfcI CTRYAG 3 cut(s) 58, 285, 377
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 3 cut(s) 10, 138, 183
SsiI CCGC 1 cut(s) 234
StyI CCWWGG 2 cut(s) 26, 241
TaiI ACGT 1 cut(s) 182
TaqI TCGA 4 cut(s) 14, 133, 309, 470
TasI AATT 3 cut(s) 10, 138, 183
TfiI GAWTC 2 cut(s) 467, 487
TscAI CASTG 1 cut(s) 289
TseI GCWGC 4 cut(s) 52, 107, 376, 507
TspDTI ATGAA 3 cut(s) 83, 380, 543
TspRI CASTG 1 cut(s) 289
Van91I CCANNNNNTGG 1 cut(s) 301
XapI RAATTY 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.