Rmu_sc0010644.1_g000002

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010644.1
OG0029428
Physical Location & Seq
Forward (+)
4537 .. 5040
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010644.1_g000002.1.cds

Sequence Viewer

Length: 504 bp
atgaactgcaataaactctcattggaagccagcacccatgcagcgcagaacgaaaggttacctcttcgagtaattgttcaagtcctcttcttcgaacagcttagacttcgaacatcaatttctggttggttgtttgttgacaatcttgagaactcacaaaatcctagtggaaaccttgggctccccagcaaaaatgatgggtccaatcaagtagaccctgcacaagttgatcgagctgtgggttttgatcatgaggtgagggagcgtgttttggagctccaaaaggagtgttcaagtatgaaaaaggagcttcagaagctggtaaaaaacaagagaagttggagcattcttcccattaggttaggttttagaaaaaaggttgatccttgttgtccaaaagaatcaaaggcctctgataggatgacaccagcatcatgtttcagtgggcaacaaaatcatgtgaatggtgaagtgcctcattcacctgcaaggcctcaaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

167

Amino Acids

18.79

Weight (kDa)

9.25

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029428)

Species Orthologous Gene IDs
pyrus_communis pycom12g11670
rosa_multiflora Rmu_sc0010644.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 493
Acc36I ACCTGC 1 cut(s) 493
AccI GTMKAC 1 cut(s) 213
AclWI GGATC 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 417
AgsI TTSAA 2 cut(s) 80, 294
AluBI AGCT 5 cut(s) 100, 236, 277, 310, 319
AluI AGCT 5 cut(s) 100, 236, 277, 310, 319
Alw21I GWGCWC 1 cut(s) 279
AlwI GGATC 1 cut(s) 377
AlwNI CAGNNNCTG 1 cut(s) 319
AoxI GGCC 2 cut(s) 408, 491
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 3 cut(s) 268, 474, 479
AsuII TTCGAA 2 cut(s) 93, 109
AvaII GGWCC 1 cut(s) 201
BanII GRGCYC 2 cut(s) 183, 279
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 191
BclI TGATCA 1 cut(s) 247
BfaI CTAG 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 493
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 2 cut(s) 182, 202
BmsI GCATC 1 cut(s) 440
Bpu14I TTCGAA 2 cut(s) 93, 109
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 426
BseLI CCNNNNNNNGG 1 cut(s) 417
BseXI GCAGC 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 2 cut(s) 410, 493
BsiHKAI GWGCWC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 417
BsmI GAATGC 1 cut(s) 345
BsnI GGCC 2 cut(s) 410, 493
Bsp119I TTCGAA 2 cut(s) 93, 109
Bsp1286I GDGCHC 2 cut(s) 183, 279
Bsp143I GATC 3 cut(s) 229, 247, 382
BspANI GGCC 2 cut(s) 410, 493
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 182, 202
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 1 cut(s) 377
BspT104I TTCGAA 2 cut(s) 93, 109
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 3 cut(s) 229, 247, 382
BssT1I CCWWGG 1 cut(s) 175
Bst6I CTCTTC 2 cut(s) 69, 92
BstBI TTCGAA 2 cut(s) 93, 109
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 101
BstEII GGTNACC 1 cut(s) 57
BstENI CCTNNNNNAGG 1 cut(s) 415
BstF5I GGATG 1 cut(s) 426
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 3 cut(s) 232, 250, 385
BstMBI GATC 3 cut(s) 229, 247, 382
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstPI GGTNACC 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 53
BsuRI GGCC 2 cut(s) 410, 493
BtsCI GGATG 1 cut(s) 426
BtsIMutI CAGTG 1 cut(s) 448
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 1 cut(s) 31
CaiI CAGNNNCTG 1 cut(s) 319
CciI TCATGA 1 cut(s) 250
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 201
CviAII CATG 4 cut(s) 38, 251, 435, 458
CviJI RGCY 9 cut(s) 29, 100, 181, 236, 277, 310, 319, 410, 493
CviKI_1 RGCY 9 cut(s) 29, 100, 181, 236, 277, 310, 319, 410, 493
DdeI CTNAG 1 cut(s) 101
DpnI GATC 3 cut(s) 231, 249, 384
DpnII GATC 3 cut(s) 229, 247, 382
Eam1104I CTCTTC 2 cut(s) 69, 92
EarI CTCTTC 2 cut(s) 69, 92
Ecl136II GAGCTC 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 175
Eco147I AGGCCT 2 cut(s) 410, 493
Eco24I GRGCYC 2 cut(s) 183, 279
Eco47I GGWCC 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 296
Eco91I GGTNACC 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 277
EcoNI CCTNNNNNAGG 1 cut(s) 415
EcoO65I GGTNACC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 175
EcoT38I GRGCYC 2 cut(s) 183, 279
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 4 cut(s) 41, 254, 438, 461
FaiI YATR 5 cut(s) 39, 252, 299, 436, 459
FatI CATG 4 cut(s) 37, 250, 434, 457
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 433
FriOI GRGCYC 2 cut(s) 183, 279
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 42
GsaI CCCAGC 1 cut(s) 189
HaeIII GGCC 2 cut(s) 410, 493
HhaI GCGC 1 cut(s) 46
Hin1II CATG 4 cut(s) 41, 254, 438, 461
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 1 cut(s) 401
HphI GGTGA 3 cut(s) 268, 474, 479
Hpy166II GTNNAC 2 cut(s) 139, 214
Hpy188I TCNGA 2 cut(s) 315, 415
Hpy188III TCNNGA 2 cut(s) 146, 251
Hpy8I GTNNAC 2 cut(s) 139, 214
HpyCH4V TGCA 4 cut(s) 9, 41, 221, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 4 cut(s) 41, 254, 438, 461
HspAI GCGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 3 cut(s) 229, 247, 382
LmnI GCTCC 6 cut(s) 186, 262, 274, 282, 307, 342
LpnPI CCDG 7 cut(s) 43, 108, 199, 231, 305, 441, 498
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 440
MaeI CTAG 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 57
MalI GATC 3 cut(s) 231, 249, 384
MboI GATC 3 cut(s) 229, 247, 382
MboII GAAGA 4 cut(s) 56, 79, 82, 341
MhlI GDGCHC 2 cut(s) 183, 279
MluCI AATT 2 cut(s) 72, 117
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 7 cut(s) 72, 95, 247, 252, 421, 486, 504
MslI CAYNNNNRTG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 316
NdeII GATC 3 cut(s) 229, 247, 382
NlaIII CATG 4 cut(s) 41, 254, 438, 461
NlaIV GGNNCC 2 cut(s) 182, 202
NspV TTCGAA 2 cut(s) 93, 109
PagI TCATGA 1 cut(s) 250
PaqCI CACCTGC 1 cut(s) 493
PceI AGGCCT 2 cut(s) 410, 493
PctI GAATGC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 401
PkrI GCNGC 1 cut(s) 43
Psp124BI GAGCTC 1 cut(s) 279
PspEI GGTNACC 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 182, 202
PspPI GGNCC 1 cut(s) 201
PstNI CAGNNNCTG 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 462
SacI GAGCTC 1 cut(s) 279
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 3 cut(s) 229, 247, 382
Sau96I GGNCC 1 cut(s) 201
SduI GDGCHC 2 cut(s) 183, 279
SfaNI GCATC 1 cut(s) 440
SfuI TTCGAA 2 cut(s) 93, 109
SinI GGWCC 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 2 cut(s) 72, 117
SseBI AGGCCT 2 cut(s) 410, 493
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 279
StuI AGGCCT 2 cut(s) 410, 493
StyI CCWWGG 1 cut(s) 175
TaqI TCGA 4 cut(s) 67, 93, 109, 232
TasI AATT 2 cut(s) 72, 117
TfiI GAWTC 1 cut(s) 401
TscAI CASTG 1 cut(s) 448
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 17, 314
TspRI CASTG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 201
XagI CCTNNNNNAGG 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.