pycom12g12170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0026916
Physical Location & Seq
Reverse (-)
14693250 .. 14693677
428 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGGTCAAACCCTTATGTTGTGTATCCTCGATTAATGCAGCCTCAGATGCTTCAATTGTCGATTCTAGAGTATTGAGCAGAAGGTTACACATATGGGTTAGGTCTCCACCAATAAAGGGCATAGGGGAAGAAGCACTACTCCTAGGAATCAACACACGAAAACTTTGTTATAAATTATCCCTTTTCCTTATTAGGATCGGGACTAACAAGAATGGTTGGGGCAACAAACATCCATCTCATTCATTTTTTGGATACCCCTATAACCATCGAAGACTGTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.63

Weight (kDa)

10.36

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0026916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G12905
pyrus_communis pycom12g12170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AclWI GGATC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 54, 280
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 38
AseI ATTAAT 1 cut(s) 33
AspA2I CCTAGG 1 cut(s) 142
AvrII CCTAGG 1 cut(s) 142
BarI GAAGNNNNNNTAC 2 cut(s) 120, 152
BbsI GAAGAC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 241, 273
BciVI GTATCC 2 cut(s) 34, 245
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 2 cut(s) 66, 143
BfuI GTATCC 2 cut(s) 34, 245
BisI GCNGC 1 cut(s) 39
BlnI CCTAGG 1 cut(s) 142
BlsI GCNGC 1 cut(s) 40
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 50
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 214
Bso31I GGTCTC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 56
BspPI GGATC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 277
BsuI GTATCC 2 cut(s) 34, 245
BtsCI GGATG 1 cut(s) 229
CviJI RGCY 1 cut(s) 41
CviKI_1 RGCY 1 cut(s) 41
DdeI CTNAG 1 cut(s) 43
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaiI YATR 6 cut(s) 16, 92, 94, 122, 171, 261
FaqI GGGAC 1 cut(s) 214
FauNDI CATATG 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 2 cut(s) 66, 143
GluI GCNGC 1 cut(s) 39
HinfI GANTC 2 cut(s) 62, 147
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 2 cut(s) 66, 199
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 43
Kzo9I GATC 1 cut(s) 195
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 37
MaeI CTAG 2 cut(s) 66, 143
MaeIII GTNAC 1 cut(s) 84
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 2 cut(s) 140, 282
MfeI CAATTG 1 cut(s) 54
MluCI AATT 2 cut(s) 54, 173
MnlI CCTC 2 cut(s) 37, 52
MseI TTAA 1 cut(s) 33
MunI CAATTG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeI CATATG 1 cut(s) 92
NdeII GATC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 62, 147
PkrI GCNGC 1 cut(s) 40
PshBI ATTAAT 1 cut(s) 33
PsiI TTATAA 1 cut(s) 171
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 195
SetI ASST 2 cut(s) 86, 104
SfaNI GCATC 1 cut(s) 37
SgeI CNNG 6 cut(s) 40, 78, 155, 168, 211, 220
Sse9I AATT 2 cut(s) 54, 173
SspMI CTAG 2 cut(s) 66, 143
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 3 cut(s) 29, 60, 268
TasI AATT 2 cut(s) 54, 173
TfiI GAWTC 2 cut(s) 62, 147
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 231
VspI ATTAAT 1 cut(s) 33
XbaI TCTAGA 1 cut(s) 65
XmaJI CCTAGG 1 cut(s) 142
XspI CTAG 2 cut(s) 66, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.