Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0029261

Physical Location & Seq

Genomic Coordinates Forward (+)

17536031 .. 17537081

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAATTCCCGGCGATTAGGGCTTTTCTGATCTGTCTAATTCTCTGCGCCGGTTCGAGCTTCGTTCATGGCGAGGAGCCGGCGAAGAATAAGTTCCGGGAACGAGAAGCCAGCGACGACGCCCTTGGATATCCGAACATAGATGAGGATGCATTGTTGAATACGCAGTGCCCTGCAAAATTGGAGCTCAGATGGCAAACGGAAGTTAGTTCTAGTATATATGCTACGCCCTTGATCGCCGATATCAATAGTGATGGAAAGCTTGAGATTGTGGTTTCTTCTTTCGTCCACTATCTTGAAGTTCTTGAAGGTGCTGATGGAGACAAACATCCCGGTTGGCCTGCTTTCCATCAGTCGACCGTACATGCGAGTCCTCTCCTGCATGATATTGACAAGGATGGTGTGAGAGAAATAACTTTGGCAACCTACAATGGTGAAGTTTTATTTTTCAGGGTTTCAGGTTACATGATGCTAGATAAACTTGTAGTACCTCGTAGGAAAGTTAAAAAGAACTGGTATGGGGGTCTGCATCCGGATCCCTGTGGATCGCACTCATCCAGATGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046872 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FG-GAP VCBS

Protein Analysis

190

Amino Acids

21.05

Weight (kDa)

5.88

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029261)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g13240 pycom12g15170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	356
AccIII	TCCGGA	1 cut(s)	532
AclWI	GGATC	3 cut(s)	530, 543, 553
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	363, 489
AgsI	TTSAA	3 cut(s)	160, 299, 308
AluBI	AGCT	3 cut(s)	60, 187, 262
AluI	AGCT	3 cut(s)	60, 187, 262
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	3 cut(s)	530, 543, 553
Aor13HI	TCCGGA	1 cut(s)	532
AoxI	GGCC	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	50
AsuC2I	CCSGG	3 cut(s)	11, 98, 333
AsuHPI	GGTGA	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	189
BccI	CCATC	5 cut(s)	186, 248, 311, 357, 392
BcnI	CCSGG	3 cut(s)	11, 98, 333
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	213, 473
Bme1390I	CCNGG	3 cut(s)	11, 98, 333
BmiI	GGNNCC	2 cut(s)	78, 537
BmrFI	CCNGG	3 cut(s)	11, 98, 333
BmsI	GCATC	3 cut(s)	139, 459, 538
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	3 cut(s)	11, 98, 333
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	532
Bse118I	RCCGGY	2 cut(s)	50, 79
Bse1I	ACTGG	1 cut(s)	518
BseAI	TCCGGA	1 cut(s)	532
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	5 cut(s)	154, 328, 403, 529, 554
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	518
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	340
BsiEI	CGRYCG	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	6 cut(s)	11, 51, 80, 97, 333, 533
BsmAI	GTCTC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	340
Bsp1286I	GDGCHC	2 cut(s)	173, 189
Bsp13I	TCCGGA	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	30, 234, 535, 545
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	1 cut(s)	201
BspEI	TCCGGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	78, 537
BspPI	GGATC	3 cut(s)	530, 543, 553
BsrFI	RCCGGY	2 cut(s)	50, 79
BsrI	ACTGG	1 cut(s)	518
BssAI	RCCGGY	2 cut(s)	50, 79
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	4 cut(s)	30, 234, 535, 545
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	361
BstACI	GRCGYC	1 cut(s)	120
BstC8I	GCNNGC	3 cut(s)	81, 112, 342
BstDEI	CTNAG	1 cut(s)	188
BstF5I	GGATG	5 cut(s)	154, 328, 403, 529, 554
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	4 cut(s)	33, 237, 538, 548
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	4 cut(s)	30, 234, 535, 545
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 193
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	9, 96, 331
BstSLI	GKGCMC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	1 cut(s)	340
BtsCI	GGATG	5 cut(s)	154, 328, 403, 529, 554
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	3 cut(s)	81, 112, 342
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	2 cut(s)	50, 79
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	362, 488
CviAII	CATG	5 cut(s)	68, 365, 383, 466, 567
CviJI	RGCY	7 cut(s)	23, 60, 79, 110, 187, 262, 340
CviKI_1	RGCY	7 cut(s)	23, 60, 79, 110, 187, 262, 340
CviQI	GTAC	2 cut(s)	362, 488
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	4 cut(s)	32, 236, 537, 547
DpnII	GATC	4 cut(s)	30, 234, 535, 545
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	189
Eco32I	GATATC	2 cut(s)	131, 244
Eco53kI	GAGCTC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	187
EcoRV	GATATC	2 cut(s)	131, 244
EcoT14I	CCWWGG	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	5 cut(s)	71, 368, 386, 469, 570
FatI	CATG	5 cut(s)	67, 364, 382, 465, 566
FblI	GTMKAC	1 cut(s)	356
FokI	GGATG	5 cut(s)	161, 315, 410, 516, 541
FriOI	GRGCYC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	213, 473
GlaI	GCGC	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	340
HapII	CCGG	6 cut(s)	11, 51, 80, 97, 333, 533
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	5 cut(s)	71, 368, 386, 469, 570
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	6 cut(s)	11, 51, 80, 97, 333, 533
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	289, 357
Hpy188I	TCNGA	3 cut(s)	30, 135, 191
Hpy188III	TCNNGA	4 cut(s)	296, 305, 533, 558
Hpy8I	GTNNAC	2 cut(s)	289, 357
Hpy99I	CGWCG	2 cut(s)	119, 122
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	4 cut(s)	152, 176, 382, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 193
HpyF3I	CTNAG	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	5 cut(s)	71, 368, 386, 469, 570
HspAI	GCGC	1 cut(s)	48
Kpn2I	TCCGGA	1 cut(s)	532
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Kzo9I	GATC	4 cut(s)	30, 234, 535, 545
LmnI	GCTCC	2 cut(s)	76, 184
LweI	GCATC	3 cut(s)	139, 459, 538
MaeI	CTAG	2 cut(s)	213, 473
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	4 cut(s)	32, 236, 537, 547
MboI	GATC	4 cut(s)	30, 234, 535, 545
MboII	GAAGA	2 cut(s)	97, 270
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	2 cut(s)	173, 189
MluCI	AATT	3 cut(s)	5, 39, 179
MlyI	GAGTC	1 cut(s)	379
MnlI	CCTC	4 cut(s)	67, 139, 384, 501
Mph1103I	ATGCAT	1 cut(s)	154
MroI	TCCGGA	1 cut(s)	532
MroNI	GCCGGC	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	559
MspI	CCGG	6 cut(s)	11, 51, 80, 97, 333, 533
MspR9I	CCNGG	3 cut(s)	11, 98, 333
MwoI	GCNNNNNNNGC	2 cut(s)	20, 193
NaeI	GCCGGC	1 cut(s)	81
NciI	CCSGG	3 cut(s)	11, 98, 333
NdeII	GATC	4 cut(s)	30, 234, 535, 545
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	5 cut(s)	71, 368, 386, 469, 570
NlaIV	GGNNCC	2 cut(s)	78, 537
NsiI	ATGCAT	1 cut(s)	154
NspI	RCATGY	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdiI	GCCGGC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	92
PfoI	TCCNGGA	1 cut(s)	96
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	78, 537
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	2 cut(s)	363, 489
RsaNI	GTAC	2 cut(s)	362, 488
RseI	CAYNNNNRTG	1 cut(s)	559
SacI	GAGCTC	1 cut(s)	189
SalI	GTCGAC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	504
Sau3AI	GATC	4 cut(s)	30, 234, 535, 545
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	3 cut(s)	11, 98, 333
SduI	GDGCHC	2 cut(s)	173, 189
SetI	ASST	7 cut(s)	62, 189, 264, 313, 428, 463, 493
SfaNI	GCATC	3 cut(s)	139, 459, 538
SmiMI	CAYNNNNRTG	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	5, 39, 179
SspMI	CTAG	2 cut(s)	213, 473
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	3 cut(s)	9, 96, 331
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	2 cut(s)	56, 356
TasI	AATT	3 cut(s)	5, 39, 179
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	17, 56
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	2 cut(s)	213, 473
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.