pycom12g17070

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0029264
Physical Location & Seq
Reverse (-)
19347570 .. 19348258
689 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGATGCTGGGATCGATCCTGCTTGCTCACTTTGCTCAGAACCTTAGACAAATTAATTTGTCATATACCTCAGTTACAGATGTGGGGCTGTTATCCTTAGCCAGTATCAGTTGCCTACAGAGCTTAACCATCTTGCACTTGGAGGGCTTGAGCCCTAGTGGACTGGCAGCTGCCTTATTGGCTTGCGGGGGGCTAACTAAAGTAAAGCTCCAAGCAACCTTCAAGTCATTGCTACCCCAAGCTCTTTTCGAACATTTAGAAGTGCGCGGTTGTGTATTTCAGTGGAGAAATAAGTTCTTCAGGGCTGAATTGGACCCTCAGTGTTGGAAAATACAATTAGAAGATATCATGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

119

Amino Acids

13.07

Weight (kDa)

7.71

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029264)

Species Orthologous Gene IDs
pyrus_communis pycom04g14900 pycom12g17070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 2 cut(s) 186, 267
AclWI GGATC 2 cut(s) 10, 19
AcuI CTGAAG 1 cut(s) 283
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 4 cut(s) 123, 170, 208, 242
AluI AGCT 4 cut(s) 123, 170, 208, 242
AlwI GGATC 2 cut(s) 10, 19
ApeKI GCWGC 2 cut(s) 167, 170
AseI ATTAAT 1 cut(s) 54
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 313
AsuII TTCGAA 1 cut(s) 249
AvaII GGWCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 157, 179
BccI CCATC 1 cut(s) 137
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 116
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 2 cut(s) 168, 171
BlsI GCNGC 2 cut(s) 169, 172
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 97
Bpu14I TTCGAA 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 169
Bsa29I ATCGAT 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 102, 168
Bse3DI GCAATG 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 14
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 3 cut(s) 50, 84, 332
BseNI ACTGG 2 cut(s) 102, 168
BseXI GCAGC 2 cut(s) 157, 179
BseYI CCCAGC 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 267
BshVI ATCGAT 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 11, 15
BspACI CCGC 2 cut(s) 186, 267
BspCNI CTCAG 3 cut(s) 49, 83, 331
BspDI ATCGAT 1 cut(s) 14
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 2 cut(s) 10, 19
BspT104I TTCGAA 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 227
BsrI ACTGG 2 cut(s) 102, 168
BssMI GATC 2 cut(s) 11, 15
BstBI TTCGAA 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 24, 184
BstDEI CTNAG 5 cut(s) 36, 44, 70, 97, 318
BstFNI CGCG 1 cut(s) 267
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 2 cut(s) 14, 18
BstMBI GATC 2 cut(s) 11, 15
BstMWI GCNNNNNNNGC 3 cut(s) 32, 120, 179
BstSFI CTRYAG 1 cut(s) 116
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 157, 179
Bsu15I ATCGAT 1 cut(s) 14
BsuTUI ATCGAT 1 cut(s) 14
BtsIMutI CAGTG 2 cut(s) 287, 326
Cac8I GCNNGC 2 cut(s) 24, 184
CfoI GCGC 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 313
ClaI ATCGAT 1 cut(s) 14
CviAII CATG 1 cut(s) 349
DdeI CTNAG 5 cut(s) 36, 44, 70, 97, 318
DpnI GATC 2 cut(s) 13, 17
DpnII GATC 2 cut(s) 11, 15
Eco24I GRGCYC 1 cut(s) 155
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 283
EcoRV GATATC 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 1 cut(s) 352
FaiI YATR 3 cut(s) 64, 66, 350
FatI CATG 1 cut(s) 348
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 2 cut(s) 168, 171
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 168, 171
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 266
GluI GCNGC 2 cut(s) 168, 171
GsaI CCCAGC 1 cut(s) 11
HhaI GCGC 1 cut(s) 267
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 39
Hpy8I GTNNAC 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 229
HpyCH4V TGCA 2 cut(s) 136, 352
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 120, 179
HpyF3I CTNAG 5 cut(s) 36, 44, 70, 97, 318
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 1 cut(s) 265
Kzo9I GATC 2 cut(s) 11, 15
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 4 cut(s) 32, 115, 149, 286
Lsp1109I GCAGC 2 cut(s) 157, 179
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 13, 17
MboI GATC 2 cut(s) 11, 15
MboII GAAGA 2 cut(s) 289, 353
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 4 cut(s) 51, 55, 308, 335
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 3 cut(s) 79, 136, 327
MseI TTAA 2 cut(s) 54, 125
MspA1I CMGCKG 1 cut(s) 170
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 32, 120, 179
NdeII GATC 2 cut(s) 11, 15
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 1 cut(s) 315
NspV TTCGAA 1 cut(s) 249
PkrI GCNGC 2 cut(s) 169, 172
PshBI ATTAAT 1 cut(s) 54
PspFI CCCAGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 170
SaqAI TTAA 2 cut(s) 54, 125
SatI GCNGC 2 cut(s) 168, 171
Sau3AI GATC 2 cut(s) 11, 15
Sau96I GGNCC 1 cut(s) 313
SduI GDGCHC 1 cut(s) 155
SetI ASST 7 cut(s) 45, 71, 125, 172, 210, 221, 244
SfcI CTRYAG 1 cut(s) 116
SfuI TTCGAA 1 cut(s) 249
SinI GGWCC 1 cut(s) 313
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
Sse9I AATT 4 cut(s) 51, 55, 308, 335
SsiI CCGC 2 cut(s) 186, 267
SspMI CTAG 1 cut(s) 156
TaqI TCGA 2 cut(s) 14, 249
TasI AATT 4 cut(s) 51, 55, 308, 335
Tru1I TTAA 2 cut(s) 54, 125
Tru9I TTAA 2 cut(s) 54, 125
TscAI CASTG 2 cut(s) 287, 326
TseI GCWGC 2 cut(s) 167, 170
TspRI CASTG 2 cut(s) 287, 326
VpaK11BI GGWCC 1 cut(s) 313
VspI ATTAAT 1 cut(s) 54
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.