pycom12g18110
ERF Family

Transducin WD40 repeat-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0028720
Physical Location & Seq
Forward (+)
20364941 .. 20365849
909 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGCAGACAGCTGGATCTATTCATATTAGCAATATCTTAACCGGAAAATGCCTGGCAAAAATAAATCCTAGCAATGGTGGTCCCAAGATCGACAACCGTGAAGGCAATGCTGGCTCGTCAAGGAAGCAAAGCAACTCATCTGTGGTGAGCAGCACCGTCGCTGACGCTTTGAAAGACGTAACTGCTCTCTTCTATGATGAAGATCGCAACGAGATATATACAGGAAATAGGCATGGTTTTGTTCATGTGTGGTCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.25

Weight (kDa)

7.93

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7899 PF25463 2 - 84 1.2e-22 Domain of unknown function (DUF7899)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028720)

Species Orthologous Gene IDs
malus_domestica MD12G1194900.v1.1
pyrus_communis pycom12g18110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AlwI GGATC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 162
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 53
BfaI CTAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse3DI GCAATG 2 cut(s) 79, 112
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 53
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 2 cut(s) 79, 112
BseXI GCAGC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 66
Bsp143I GATC 3 cut(s) 14, 87, 202
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 1 cut(s) 22
BsrDI GCAATG 2 cut(s) 79, 112
BssMI GATC 3 cut(s) 14, 87, 202
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 98, 157
Bst6I CTCTTC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 112
BstKTI GATC 3 cut(s) 17, 90, 205
BstMBI GATC 3 cut(s) 14, 87, 202
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 80
CseI GACGC 1 cut(s) 173
CviAII CATG 2 cut(s) 233, 245
CviJI RGCY 2 cut(s) 11, 114
CviKI_1 RGCY 2 cut(s) 11, 114
DpnI GATC 3 cut(s) 16, 89, 204
DpnII GATC 3 cut(s) 14, 87, 202
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 2 cut(s) 236, 248
FaiI YATR 6 cut(s) 24, 195, 217, 219, 234, 246
FaqI GGGAC 1 cut(s) 66
FatI CATG 2 cut(s) 232, 244
Fnu4HI GCNGC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 151
HapII CCGG 1 cut(s) 42
HgaI GACGC 1 cut(s) 173
Hin1II CATG 2 cut(s) 236, 248
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 2 cut(s) 98, 157
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 2 cut(s) 236, 248
Kzo9I GATC 3 cut(s) 14, 87, 202
LpnPI CCDG 5 cut(s) 38, 55, 65, 96, 207
Lsp1109I GCAGC 1 cut(s) 162
MaeI CTAG 1 cut(s) 69
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 178
MalI GATC 3 cut(s) 16, 89, 204
MboI GATC 3 cut(s) 14, 87, 202
MboII GAAGA 2 cut(s) 181, 212
MflI RGATCY 1 cut(s) 14
MseI TTAA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 111
NdeII GATC 3 cut(s) 14, 87, 202
NlaIII CATG 2 cut(s) 236, 248
NlaIV GGNNCC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 80
PsuI RGATCY 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 11
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 3 cut(s) 14, 87, 202
Sau96I GGNCC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 53
SetI ASST 2 cut(s) 13, 180
SinI GGWCC 1 cut(s) 80
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 98, 157
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 90
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TseI GCWGC 1 cut(s) 150
TspDTI ATGAA 3 cut(s) 11, 213, 233
VpaK11BI GGWCC 1 cut(s) 80
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.