pycom12g22700

RNA polymerase-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0024684
Physical Location & Seq
Forward (+)
23546733 .. 23547219
487 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g22700.2

Sequence Viewer

Length: 351 bp
ATGGAGGAAGTGACTTTAGGGGTGATGATTCTGATGATGGTCGTGGCTATGCAAGCAGGAAGCCCTCTGGACCTCAATGATCTTTACAAGGATGAAGACGATAGGCAGAAGCTCGCAGAGATGTCTGAACTTCAAAGAGAGTTAATTCTGTCCGAAAGAGCACAGAAGAAAGATGGCAAGAGTTTAAAGGAGAATTTCCGACCAAAGTGGGACAAGGGGGAGGCCACACAGTCCCGGAAAGAGGCTCCCCCTCTTACAAACTCTCAGGTGCGTTCATCACCCAGATATGCTGACAAGGCAACTTTCAAGGATGATGCATTGAATGAGTTAATAGCAAAATGTTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0001701 GO:0001704 GO:0001706 GO:0001711 GO:0001824 GO:0001832 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007369 GO:0007492 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009790 GO:0009792 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019899 GO:0030154 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035987 GO:0036211 GO:0040007 GO:0043009 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045165 GO:0045309 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048589 GO:0048598 GO:0048646 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050815 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051219 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0060795 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0097159 GO:0098727 GO:0099122 GO:0140110 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:1990269 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3

Protein Analysis

117

Amino Acids

13.22

Weight (kDa)

5.59

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024684)

Species Orthologous Gene IDs
pyrus_communis pycom12g22700 pycom12g22760 pycom12g22850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 4 cut(s) 134, 307, 322, 346
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw21I GWGCWC 1 cut(s) 163
AoxI GGCC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 34, 270
AvaII GGWCC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 163
BccI CCATC 2 cut(s) 31, 167
BcnI CCSGG 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 241
BseGI GGATG 2 cut(s) 97, 316
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 278
BshFI GGCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 235
BslFI GGGAC 2 cut(s) 217, 224
BslI CCNNNNNNNGG 1 cut(s) 241
BsmFI GGGAC 2 cut(s) 217, 224
BsnI GGCC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 79
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 246
BssMI GATC 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 54, 114
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 97, 316
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 53, 296
BstSCI CCNGG 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 2 cut(s) 97, 316
Cac8I GCNNGC 2 cut(s) 54, 114
Cfr13I GGNCC 1 cut(s) 70
CviJI RGCY 5 cut(s) 47, 63, 112, 224, 245
CviKI_1 RGCY 5 cut(s) 47, 63, 112, 224, 245
DdeI CTNAG 1 cut(s) 264
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DraI TTTAAA 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 319
FaiI YATR 2 cut(s) 50, 288
FaqI GGGAC 2 cut(s) 217, 224
FokI GGATG 2 cut(s) 104, 323
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 235
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 235
HphI GGTGA 2 cut(s) 34, 270
Hpy188I TCNGA 4 cut(s) 33, 127, 154, 200
Hpy188III TCNNGA 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 52, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 296
HpyF3I CTNAG 1 cut(s) 264
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 5 cut(s) 42, 53, 248, 251, 295
LweI GCATC 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 2 cut(s) 107, 178
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 2 cut(s) 144, 193
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 5 cut(s) 75, 83, 214, 235, 261
Mph1103I ATGCAT 1 cut(s) 319
MseI TTAA 3 cut(s) 143, 185, 329
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 53, 296
NciI CCSGG 1 cut(s) 235
NdeII GATC 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 10
NsiI ATGCAT 1 cut(s) 319
PfeI GAWTC 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 70
SaqAI TTAA 3 cut(s) 143, 185, 329
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 235
SduI GDGCHC 1 cut(s) 163
SetI ASST 3 cut(s) 75, 114, 270
SfaNI GCATC 1 cut(s) 304
SinI GGWCC 1 cut(s) 70
Sse9I AATT 2 cut(s) 144, 193
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 231
TasI AATT 2 cut(s) 144, 193
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 3 cut(s) 143, 185, 329
Tru9I TTAA 3 cut(s) 143, 185, 329
TseFI GTSAC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 108, 264
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 193
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.