pycom13g04520

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
3058942 .. 3059139
198 bp
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UTR
Exon/CDS
Intron
pycom13g04520.1

Sequence Viewer

Length: 198 bp
ATGAGGAGCCTAATCAAGTTGTTAGGGACTCTGAAATCAAAACTGAGGTTTTTAAACAAAAGAAATGCGTATTCAGAAATTGAGAAAACTGAGAGCATGAGGATGGACATGATGCACAGGAAAGCTCAGGCATCAATTGTACCGACTCTGAAGAATGCTGATTACCGGAGGAAAAAGAGCCACGCACATAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.7

Weight (kDa)

11.08

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028258)

Species Orthologous Gene IDs
malus_domestica MD13G1051200.v1.1
pyrus_communis pycom13g04520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 1 cut(s) 141
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
BccI CCATC 1 cut(s) 97
BisI GCNGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 8
BmsI GCATC 2 cut(s) 102, 140
Bpu10I CCTNAGC 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 165
BseGI GGATG 1 cut(s) 108
BseMII CTCAG 3 cut(s) 35, 81, 140
BseRI GAGGAG 1 cut(s) 19
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 160
BspACI CCGC 1 cut(s) 193
BspCNI CTCAG 3 cut(s) 36, 82, 139
BspLI GGNNCC 1 cut(s) 8
BstDEI CTNAG 3 cut(s) 44, 90, 126
BstF5I GGATG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 108
Csp6I GTAC 1 cut(s) 140
CviAII CATG 2 cut(s) 97, 109
CviJI RGCY 4 cut(s) 9, 125, 180, 192
CviKI_1 RGCY 4 cut(s) 9, 125, 180, 192
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 3 cut(s) 44, 90, 126
DraI TTTAAA 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 170
FaeI CATG 2 cut(s) 100, 112
FaiI YATR 3 cut(s) 98, 110, 189
FaqI GGGAC 1 cut(s) 40
FatI CATG 2 cut(s) 96, 108
Fnu4HI GCNGC 1 cut(s) 193
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 193
GluI GCNGC 1 cut(s) 193
HapII CCGG 1 cut(s) 166
Hin1II CATG 2 cut(s) 100, 112
HinfI GANTC 2 cut(s) 28, 145
HpaII CCGG 1 cut(s) 166
Hpy188I TCNGA 3 cut(s) 33, 76, 150
HpyCH4V TGCA 1 cut(s) 115
HpyF3I CTNAG 3 cut(s) 44, 90, 126
Hsp92II CATG 2 cut(s) 100, 112
LmnI GCTCC 1 cut(s) 6
LpnPI CCDG 3 cut(s) 103, 113, 179
LweI GCATC 2 cut(s) 102, 140
MboII GAAGA 1 cut(s) 163
MfeI CAATTG 1 cut(s) 135
MluCI AATT 2 cut(s) 78, 135
MlyI GAGTC 2 cut(s) 22, 139
MnlI CCTC 3 cut(s) 39, 93, 162
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 1 cut(s) 166
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 160
NlaIII CATG 2 cut(s) 100, 112
NlaIV GGNNCC 1 cut(s) 8
PctI GAATGC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 194
PleI GAGTC 2 cut(s) 22, 139
PpsI GAGTC 2 cut(s) 22, 139
PspN4I GGNNCC 1 cut(s) 8
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 193
SchI GAGTC 2 cut(s) 22, 139
SetI ASST 2 cut(s) 50, 127
SfaNI GCATC 2 cut(s) 102, 140
SgeI CNNG 7 cut(s) 28, 109, 121, 130, 140, 178, 194
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 2 cut(s) 78, 135
SsiI CCGC 1 cut(s) 193
TasI AATT 2 cut(s) 78, 135
TauI GCSGC 1 cut(s) 195
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.