Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0028255

Physical Location & Seq

Genomic Coordinates Forward (+)

3206164 .. 3207625

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCGAATTTCACAGGTGGCTATGTCGCTGAGTGCCAAAAGCCTGAACTGGTTTTGCATGCAGTCAACTGGAGTCGTCTGCGTTTTCGGAATTGGTGCCGCGGTTCACTTTGCACCTTCATCATCATCTTCTTCGTTCAAAAGGTAGCTATACAGGCAGTGAGAAAGAAAGTTGGATACCGGATTCAAGTTCGTGCTGACGCCAATCGGAACTGGACGTATAAAGAAGCTATCCAGTTTGGATCCTCGGAACCTGTTCAAAATGAAGGCGACATTATCGGATTCTGTGAAGAAAGTGGTTTACTTGTGGCACTGGATGAAACTATTGACAGTACTAGAGAACATCCGCTTGATAAGCTGGTGAAGTATACCCATCCGGGAATAGTAGCTACTGTTATTAAACCTAGCGTTGTTGGCAGCTTCGGAAATACAGCAATCATTGCCCAGTGGGCACAGCAGCACCAAAAAATGGCTGTTGTTAGTGCTGCGTTTGAAAGTGGGCTAGAAATCTGTGAAATGATGAATTATTCATTGGCTCCGTCAATAGCCCATGGTTTAGGAACTTACCGCTGGCTAAAAGATGTAAACACTCCTCTCAAGATAGGTTTTAATCCATATAGTGGCTTCGTAGAAGCATCTGTTGCTGATCAAGTTCTTGAAAAATTTCAAATAAATGGCAACGTAGTTCATAGAAATTTTACCGGAGAGCAAGTCCGCGTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0010109 GO:0019222 GO:0031323 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042548 GO:0042550 GO:0043467 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0050789 GO:0050794 GO:0051186 GO:0051188 GO:0065007 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6 MR_MLE_C TPP_enzyme_C TPP_enzyme_M_2 TPP_enzyme_N

Protein Analysis

242

Amino Acids

26.97

Weight (kDa)

8.25

Isoelectric Point (pI)

16.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028255)

Species	Orthologous Gene IDs
malus_domestica	MD13G1054300.v1.1
pyrus_communis	pycom13g04820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	96
AccB7I	CCANNNNNTGG	2 cut(s)	469, 620
AccI	GTMKAC	1 cut(s)	368
AccII	CGCG	2 cut(s)	102, 717
AciI	CCGC	5 cut(s)	100, 102, 347, 568, 715
AclWI	GGATC	2 cut(s)	237, 250
AcsI	RAATTY	3 cut(s)	7, 662, 694
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	469, 620
AgsI	TTSAA	6 cut(s)	140, 188, 260, 494, 659, 668
AjuI	GAANNNNNNNTTGG	2 cut(s)	515, 547
AluBI	AGCT	5 cut(s)	149, 230, 358, 389, 420
AluI	AGCT	5 cut(s)	149, 230, 358, 389, 420
AlwI	GGATC	2 cut(s)	237, 250
ApeKI	GCWGC	3 cut(s)	417, 457, 485
ApoI	RAATTY	3 cut(s)	7, 662, 694
Asp700I	GAANNNNTTC	2 cut(s)	255, 663
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	373
BaeGI	GKGCMC	1 cut(s)	454
BamHI	GGATCC	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	429, 469, 472
BccI	CCATC	1 cut(s)	381
BciVI	GTATCC	1 cut(s)	170
BclI	TGATCA	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	378
BfaI	CTAG	4 cut(s)	336, 405, 503, 724
BfuI	GTATCC	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	449
BisI	GCNGC	4 cut(s)	100, 418, 458, 486
BlsI	GCNGC	4 cut(s)	101, 419, 459, 487
BmcAI	AGTACT	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	378
BmiI	GGNNCC	4 cut(s)	98, 244, 252, 537
BmrFI	CCNGG	1 cut(s)	378
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	1 cut(s)	644
BmuI	ACTGGG	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	100, 246, 550
BsaWI	WCCGGW	2 cut(s)	180, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 620
Bse1I	ACTGG	6 cut(s)	54, 74, 218, 235, 318, 445
Bse3DI	GCAATG	1 cut(s)	438
BseDI	CCNNGG	3 cut(s)	100, 246, 550
BseGI	GGATG	3 cut(s)	322, 343, 373
BseLI	CCNNNNNNNGG	2 cut(s)	469, 620
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	6 cut(s)	54, 74, 218, 235, 318, 445
BseRI	GAGGAG	1 cut(s)	582
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	3 cut(s)	429, 469, 472
Bsh1236I	CGCG	2 cut(s)	102, 717
BshNI	GGYRCC	1 cut(s)	96
BsiSI	CCGG	3 cut(s)	181, 377, 702
BslI	CCNNNNNNNGG	2 cut(s)	469, 620
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	2 cut(s)	242, 646
Bsp19I	CCATGG	1 cut(s)	550
BspACI	CCGC	5 cut(s)	100, 102, 347, 568, 715
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	2 cut(s)	102, 717
BspLI	GGNNCC	4 cut(s)	98, 244, 252, 537
BspPI	GGATC	2 cut(s)	237, 250
BspT107I	GGYRCC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	6 cut(s)	54, 74, 218, 235, 318, 445
BssECI	CCNNGG	3 cut(s)	100, 246, 550
BssMI	GATC	2 cut(s)	242, 646
BssNAI	GTATAC	1 cut(s)	369
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	550
Bst1107I	GTATAC	1 cut(s)	369
Bst4CI	ACNGT	2 cut(s)	332, 394
BstACI	GRCGYC	1 cut(s)	201
BstAPI	GCANNNNNTGC	2 cut(s)	440, 641
BstC8I	GCNNGC	2 cut(s)	60, 572
BstDEI	CTNAG	1 cut(s)	30
BstDSI	CCRYGG	2 cut(s)	100, 550
BstF5I	GGATG	3 cut(s)	322, 343, 373
BstFNI	CGCG	2 cut(s)	102, 717
BstKTI	GATC	2 cut(s)	245, 649
BstMBI	GATC	2 cut(s)	242, 646
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 355, 414, 440, 449, 641
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	454
BstUI	CGCG	2 cut(s)	102, 717
BstV1I	GCAGC	3 cut(s)	429, 469, 472
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BstZ17I	GTATAC	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	170
BtgI	CCRYGG	2 cut(s)	100, 550
BtsCI	GGATG	3 cut(s)	322, 343, 373
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	3 cut(s)	165, 311, 452
Cac8I	GCNNGC	2 cut(s)	60, 572
Cfr42I	CCGCGG	1 cut(s)	103
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	2 cut(s)	59, 551
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	2 cut(s)	244, 648
DpnII	GATC	2 cut(s)	242, 646
Eco130I	CCWWGG	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	2 cut(s)	62, 554
FaiI	YATR	9 cut(s)	24, 60, 152, 222, 369, 552, 616, 618, 690
FatI	CATG	2 cut(s)	58, 550
FbaI	TGATCA	1 cut(s)	646
FblI	GTMKAC	1 cut(s)	368
Fnu4HI	GCNGC	4 cut(s)	100, 418, 458, 486
FokI	GGATG	3 cut(s)	329, 330, 360
Fsp4HI	GCNGC	4 cut(s)	100, 418, 458, 486
FspBI	CTAG	4 cut(s)	336, 405, 503, 724
GluI	GCNGC	4 cut(s)	100, 418, 458, 486
GsuI	CTGGAG	1 cut(s)	91
HapII	CCGG	3 cut(s)	181, 377, 702
HgaI	GACGC	1 cut(s)	209
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	62, 554
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	73, 184, 282
HpaII	CCGG	3 cut(s)	181, 377, 702
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	5 cut(s)	67, 107, 302, 369, 586
Hpy188I	TCNGA	5 cut(s)	90, 210, 250, 281, 425
Hpy188III	TCNNGA	2 cut(s)	598, 656
Hpy8I	GTNNAC	5 cut(s)	67, 107, 302, 369, 586
HpyAV	CCTTC	2 cut(s)	127, 260
HpyCH4III	ACNGT	2 cut(s)	332, 394
HpyCH4IV	ACGT	2 cut(s)	218, 681
HpyCH4V	TGCA	3 cut(s)	58, 62, 114
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 355, 414, 440, 449, 641
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	2 cut(s)	218, 681
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	62, 554
Ksp22I	TGATCA	1 cut(s)	646
KspI	CCGCGG	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	242, 646
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	3 cut(s)	429, 469, 472
LweI	GCATC	1 cut(s)	644
MaeI	CTAG	4 cut(s)	336, 405, 503, 724
MaeII	ACGT	2 cut(s)	218, 681
MalI	GATC	2 cut(s)	244, 648
MboI	GATC	2 cut(s)	242, 646
MboII	GAAGA	3 cut(s)	121, 124, 302
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	5 cut(s)	7, 91, 523, 662, 694
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	2 cut(s)	256, 603
MroXI	GAANNNNTTC	2 cut(s)	255, 663
MseI	TTAA	2 cut(s)	399, 609
MspA1I	CMGCKG	2 cut(s)	102, 570
MspI	CCGG	3 cut(s)	181, 377, 702
MspR9I	CCNGG	1 cut(s)	378
MvnI	CGCG	2 cut(s)	102, 717
MwoI	GCNNNNNNNGC	6 cut(s)	155, 355, 414, 440, 449, 641
NciI	CCSGG	1 cut(s)	378
NcoI	CCATGG	1 cut(s)	550
NdeII	GATC	2 cut(s)	242, 646
NlaIII	CATG	2 cut(s)	62, 554
NlaIV	GGNNCC	4 cut(s)	98, 244, 252, 537
NspI	RCATGY	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	62
PdmI	GAANNNNTTC	2 cut(s)	255, 663
PfeI	GAWTC	2 cut(s)	184, 282
PflMI	CCANNNNNTGG	2 cut(s)	469, 620
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	4 cut(s)	101, 419, 459, 487
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PspN4I	GGNNCC	4 cut(s)	98, 244, 252, 537
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SacII	CCGCGG	1 cut(s)	103
SaqAI	TTAA	2 cut(s)	399, 609
SatI	GCNGC	4 cut(s)	100, 418, 458, 486
Sau3AI	GATC	2 cut(s)	242, 646
ScaI	AGTACT	1 cut(s)	334
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	454
SfaNI	GCATC	1 cut(s)	644
Sfr303I	CCGCGG	1 cut(s)	103
SgrBI	CCGCGG	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
SphI	GCATGC	1 cut(s)	62
Sse9I	AATT	5 cut(s)	7, 91, 523, 662, 694
SsiI	CCGC	5 cut(s)	100, 102, 347, 568, 715
SspMI	CTAG	4 cut(s)	336, 405, 503, 724
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	550
TaaI	ACNGT	2 cut(s)	332, 394
TaiI	ACGT	2 cut(s)	221, 684
TasI	AATT	5 cut(s)	7, 91, 523, 662, 694
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	184, 282
Tru1I	TTAA	2 cut(s)	399, 609
Tru9I	TTAA	2 cut(s)	399, 609
TscAI	CASTG	3 cut(s)	165, 318, 452
TseI	GCWGC	3 cut(s)	417, 457, 485
TspDTI	ATGAA	6 cut(s)	109, 279, 333, 519, 536, 677
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	3 cut(s)	165, 318, 452
Van91I	CCANNNNNTGG	2 cut(s)	469, 620
XapI	RAATTY	3 cut(s)	7, 662, 694
XceI	RCATGY	1 cut(s)	62
XmiI	GTMKAC	1 cut(s)	368
XmnI	GAANNNNTTC	2 cut(s)	255, 663
XspI	CTAG	4 cut(s)	336, 405, 503, 724
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.