Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0028252

Physical Location & Seq

Genomic Coordinates Reverse (-)

3643029 .. 3645011

Gene Structure 1983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTGAAGCAGGGGTATGCTCTTGTTGCGGTGAAAAGCTCGTCTCTATCGACATTGACCCGAAAGAGACTGAGAATTTTGCTACCTCTTTGACCAAATTGGCTAGCCAAAGGGAGGTTCGGGGTGATTTCATTCGATTCCAGGAGTGGCTTCAAAGGCATGGTCCATTCAATGCTGTTGTAGATGGTGCCAATGTCGGTCTTATCAATCAACATAATTTCAGCTTTTACCAGCTCGATACTCTGGTGAATCGCTTATGCCAAACGAGCCCATCAAAGAGATTGCCACTTGTTATATTGCACCAAAATTGTGTAACTGGCGGCCCTGCTCAGAATCCTAATAACAAGAGATTGTTAGAGAGCTGGAAAAAGTCCCGTGCACTTTACGCTACTCCAGTGGGTTCAAATGATGATTGGTACTGGTTGTACGCTGCTGTTAATTGCAAGTGTTTGATGGTGACAAACGATGAGATGAGAGACCACTTGTTCCAACTTCTAGGGACTAGTTTTTTCCCAAGATGGAAGGAAAAACATCAGGTCCGATTGTACGTCTCAAGGCAGGGACTTAAGCTTCACATGCCACCACCTTACTCGATTGTAATTCAGGAAGCAGAGGATGGGAAGTGGCATGTGCCAACAACCACAGGTGATGACATTGAGACCCCAAGGCAGTGCCTGTGTGCTACCAGAGCCAGAAATACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PPR_long PRORP

Protein Analysis

236

Amino Acids

26.8

Weight (kDa)

8.56

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRORP	PF16953	2 - 227	3.4e-72	Protein-only RNase P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028252)

Species	Orthologous Gene IDs
malus_domestica	MD13G1062200.v1.1
pyrus_communis	pycom13g05470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AciI	CCGC	2 cut(s)	30, 321
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	3 cut(s)	419, 428, 548
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflII	CTTAAG	1 cut(s)	566
AgsI	TTSAA	3 cut(s)	155, 172, 405
AhlI	ACTAGT	1 cut(s)	503
AjnI	CCWGG	1 cut(s)	141
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	5 cut(s)	40, 225, 235, 363, 571
AluI	AGCT	5 cut(s)	40, 225, 235, 363, 571
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	5 cut(s)	49, 62, 471, 556, 653
Alw44I	GTGCAC	1 cut(s)	378
AlwNI	CAGNNNCTG	1 cut(s)	676
AoxI	GGCC	1 cut(s)	322
ApaLI	GTGCAC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	76
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
AspS9I	GGNCC	3 cut(s)	164, 323, 538
AsuHPI	GGTGA	5 cut(s)	44, 137, 259, 469, 659
AsuNHI	GCTAGC	1 cut(s)	104
AvaII	GGWCC	2 cut(s)	164, 538
BaeGI	GKGCMC	1 cut(s)	382
BaeI	ACNNNNGTAYC	2 cut(s)	231, 264
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	5 cut(s)	179, 280, 448, 513, 611
BciT130I	CCWGG	1 cut(s)	143
BcoDI	GTCTC	5 cut(s)	49, 62, 471, 556, 653
BcuI	ACTAGT	1 cut(s)	503
BfaI	CTAG	3 cut(s)	105, 497, 504
BfrI	CTTAAG	1 cut(s)	566
BisI	GCNGC	2 cut(s)	322, 432
BlsI	GCNGC	2 cut(s)	323, 433
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	2 cut(s)	164, 538
BmgT120I	GGNCC	3 cut(s)	164, 323, 538
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	143
BmtI	GCTAGC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	538
BsaI	GGTCTC	2 cut(s)	471, 653
BsaJI	CCNNGG	1 cut(s)	665
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	3 cut(s)	322, 395, 425
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	665
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	63, 344
BseNI	ACTGG	3 cut(s)	322, 395, 425
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	418
BshFI	GGCC	1 cut(s)	324
BshNI	GGYRCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	382
BslFI	GGGAC	3 cut(s)	358, 514, 576
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	5 cut(s)	49, 62, 471, 556, 653
BsmBI	CGTCTC	2 cut(s)	49, 556
BsmFI	GGGAC	3 cut(s)	358, 514, 576
BsnI	GGCC	1 cut(s)	324
Bso31I	GGTCTC	2 cut(s)	471, 653
Bsp1286I	GDGCHC	2 cut(s)	272, 382
BspACI	CCGC	2 cut(s)	30, 321
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	2 cut(s)	64, 343
BspLI	GGNNCC	1 cut(s)	190
BspOI	GCTAGC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	188
BspTI	CTTAAG	1 cut(s)	566
BspTNI	GGTCTC	2 cut(s)	471, 653
BsrI	ACTGG	3 cut(s)	322, 395, 425
BssECI	CCNNGG	1 cut(s)	665
BssT1I	CCWWGG	1 cut(s)	665
Bst2UI	CCWGG	1 cut(s)	143
BstAFI	CTTAAG	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	72, 330
BstF5I	GGATG	1 cut(s)	622
BstMAI	GTCTC	5 cut(s)	49, 62, 471, 556, 653
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 157, 267, 386, 577, 689
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	2 cut(s)	580, 632
BstSCI	CCNGG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	622
BtsI	GCAGTG	1 cut(s)	677
BtsIMutI	CAGTG	2 cut(s)	402, 677
Cac8I	GCNNGC	1 cut(s)	106
CaiI	CAGNNNCTG	1 cut(s)	676
Cfr13I	GGNCC	3 cut(s)	164, 323, 538
Csp6I	GTAC	3 cut(s)	418, 427, 547
CviAII	CATG	3 cut(s)	161, 577, 629
CviQI	GTAC	3 cut(s)	418, 427, 547
DdeI	CTNAG	2 cut(s)	72, 330
Eco130I	CCWWGG	1 cut(s)	665
Eco24I	GRGCYC	1 cut(s)	272
Eco31I	GGTCTC	2 cut(s)	471, 653
Eco47I	GGWCC	2 cut(s)	164, 538
Eco57I	CTGAAG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	665
EcoT38I	GRGCYC	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	665
Esp3I	CGTCTC	2 cut(s)	49, 556
FaeI	CATG	3 cut(s)	164, 580, 632
FaiI	YATR	7 cut(s)	19, 162, 216, 259, 296, 578, 630
FaqI	GGGAC	3 cut(s)	358, 514, 576
FatI	CATG	3 cut(s)	160, 576, 628
Fnu4HI	GCNGC	2 cut(s)	322, 432
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	322, 432
FspBI	CTAG	3 cut(s)	105, 497, 504
GluI	GCNGC	2 cut(s)	322, 432
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	164, 580, 632
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	3 cut(s)	138, 250, 334
HphI	GGTGA	5 cut(s)	44, 137, 259, 469, 659
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	2 cut(s)	333, 542
Hpy188III	TCNNGA	1 cut(s)	605
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	1 cut(s)	517
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	3 cut(s)	301, 380, 444
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 157, 267, 386, 577, 689
HpyF3I	CTNAG	2 cut(s)	72, 330
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	3 cut(s)	164, 580, 632
Lsp1109I	GCAGC	1 cut(s)	418
MaeI	CTAG	3 cut(s)	105, 497, 504
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	2 cut(s)	313, 457
MhlI	GDGCHC	2 cut(s)	272, 382
MluCI	AATT	6 cut(s)	76, 98, 217, 307, 439, 600
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	3 cut(s)	97, 109, 607
MseI	TTAA	2 cut(s)	438, 567
MspCI	CTTAAG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	6 cut(s)	27, 157, 267, 386, 577, 689
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	3 cut(s)	164, 580, 632
NlaIV	GGNNCC	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	457
NspI	RCATGY	2 cut(s)	580, 632
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	3 cut(s)	138, 250, 334
PfoI	TCCNGGA	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	323, 433
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	3 cut(s)	164, 323, 538
PstNI	CAGNNNCTG	1 cut(s)	676
RsaI	GTAC	3 cut(s)	419, 428, 548
RsaNI	GTAC	3 cut(s)	418, 427, 547
SaqAI	TTAA	2 cut(s)	438, 567
SatI	GCNGC	2 cut(s)	322, 432
Sau96I	GGNCC	3 cut(s)	164, 323, 538
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	2 cut(s)	272, 382
SinI	GGWCC	2 cut(s)	164, 538
SmlI	CTYRAG	2 cut(s)	553, 566
SmoI	CTYRAG	2 cut(s)	553, 566
SpeI	ACTAGT	1 cut(s)	503
Sse9I	AATT	6 cut(s)	76, 98, 217, 307, 439, 600
SsiI	CCGC	2 cut(s)	30, 321
SspMI	CTAG	3 cut(s)	105, 497, 504
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	665
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	4 cut(s)	51, 136, 237, 593
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	6 cut(s)	76, 98, 217, 307, 439, 600
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	3 cut(s)	138, 250, 334
Tru1I	TTAA	2 cut(s)	438, 567
Tru9I	TTAA	2 cut(s)	438, 567
TscAI	CASTG	2 cut(s)	402, 677
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	1 cut(s)	121
TspRI	CASTG	2 cut(s)	402, 677
Vha464I	CTTAAG	1 cut(s)	566
VneI	GTGCAC	1 cut(s)	378
VpaK11BI	GGWCC	2 cut(s)	164, 538
XapI	RAATTY	1 cut(s)	76
XceI	RCATGY	2 cut(s)	580, 632
XspI	CTAG	3 cut(s)	105, 497, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.