Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0027954

Physical Location & Seq

Genomic Coordinates Forward (+)

4762085 .. 4764717

Gene Structure 2633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGAAACTGCAATAAATATAGCTTATGCATGCAATTTGATCAACAATGAAATGAAACAGTTTATTATCAGTTCGGAAACTGATGTGATTAGAGAAGTTGAGGACAGGGGAGACCAAGTGGAAATTGCACGTGTCATTAAAGAACAAGTCAAAAAAGACCTAAACAGGTGCCTCGAGGAAGCGCAAAACTATCTTCACAGTGTGTCTGCACCAAAACTAGCACTTGTAATAGATGGGAAGTGCTTGATGTATGCCTTAGACCCCAGTCTACGAGTGACGCTACTCAACTTGAGCTTGAATTGTAACTCAGTTGTTTGCTGTCGAGTTTCTCCTTTGCAGAAAGCACAGGTGACAAGTATGGTAAAAAAGGGTGCAAAGAAGATAACATTGAGCATTGGTGATGGTGCCAATGATGTGAGCATGATCGATCAAGGTGCTCATGTTGGCGTTGGAATAAGTGGGCAAGAGGGAATGCAAGCAGTGATGGCTAGTGATTTTGCTATTGCCCAGTTCCGCTTTCTTACTGATTTACTGCTTGTGCATGGACGGTGGTCATATATTAGATTATGCAAGGTTGTTACATACTTCTTTTACAAGAATCTTACATTCACGTTAACTCAATTTTGGTTCACCTTTCAAACTGGATTTTCTGGTCAAAGATTCTACGATGATTGGTTTCAGTCATTGTATAATGTCATATTCACAGCCTTGCCTGTAATCATCGTTGGGCTTTTTGACAAGGATGTGAGTGCAGCCCTCTCCAAGAAGTACCCTGAACTATACAGGGAGGGAATAAGAAATGCCTTTTTTAAATGGAGGGTTGTGGCAGTATGGGCTTTCTTCTCCGTTTACCAATCTTTAATCTTCTATTATTTTGTCACTTCATCAAGTGATCGTGGTCAAAACTCATCCGGAAAGATGTTTGGACTTTGGGATGTCAGCACAATGGCCTTTACTTGTGTTGTAGTGACAGTCAACTTTCGTTTGCTTATGATGTGCAATTCAATCACAAGGTGGCATTATATTAGTGTTGGAGGAAGCCTTGCAGCGTGGTTTATATTCATCTTCATATATTGTATCATAGACCAGAAGAGAAATCTTTATTACGTCATATATGTCCTGATGAGTACCTTCTATTTCTACCTGACACTTCTACTAGTCCCAGTTTTTGCACTTTTTGGCGACTTCGTTTACCAAGGGATCCAGAGATGGTTCTTCCCTTTCGATTATCAGATAATTCAGGAAATTCACAGGCATGAGCCCGAAGGTAGAAGCAGGGATGATTTACTGGAAATCGGAAACCAGCTCACCCCAGCCGAGGCAAGGAGCTTTGCCATAGCTCAACTCCCTCGGGAGGTATCAAAACACACAGGGTTTGCTTTTGACTCGCCTGGATACGAATCATTTTTCGCTTCCCAGCTGGGAGTCCATGCCCCTCAAAAAGCATGGGATGTCGCTCGGAGAGCCAGCATGAAAAGAACAGCGAAAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0007275 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022622 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0097708 GO:0098791 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

499

Amino Acids

57.06

Weight (kDa)

8.82

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_C	PF16212	161 - 407	1.9e-83	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35440
pyrus_communis	pycom13g07200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	173
AccB1I	GGYRCC	2 cut(s)	168, 404
AccI	GTMKAC	1 cut(s)	268
AccIII	TCCGGA	1 cut(s)	911
AciI	CCGC	1 cut(s)	514
AclWI	GGATC	2 cut(s)	1195, 1208
AcsI	RAATTY	1 cut(s)	1245
AcvI	CACGTG	1 cut(s)	131
AdeI	CACNNNGTG	2 cut(s)	202, 1014
AfaI	GTAC	2 cut(s)	770, 1129
AfiI	CCNNNNNNNGG	3 cut(s)	1318, 1323, 1354
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	298, 638, 1005
AhlI	ACTAGT	1 cut(s)	1156
AjnI	CCWGG	1 cut(s)	1390
AluBI	AGCT	6 cut(s)	23, 294, 1306, 1329, 1340, 1420
AluI	AGCT	6 cut(s)	23, 294, 1306, 1329, 1340, 1420
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	2 cut(s)	1195, 1208
Ama87I	CYCGRG	2 cut(s)	173, 1350
Aor13HI	TCCGGA	1 cut(s)	911
AoxI	GGCC	1 cut(s)	948
ApeKI	GCWGC	2 cut(s)	752, 1046
ApoI	RAATTY	1 cut(s)	1245
AspLEI	GCGC	1 cut(s)	184
AsuHPI	GGTGA	4 cut(s)	361, 410, 622, 1300
AvaI	CYCGRG	2 cut(s)	173, 1350
BamHI	GGATCC	1 cut(s)	1200
BanI	GGYRCC	2 cut(s)	168, 404
BanII	GRGCYC	1 cut(s)	1263
BbrPI	CACGTG	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	764, 1058
BccI	CCATC	4 cut(s)	227, 395, 478, 1203
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	1 cut(s)	1392
BciVI	GTATCC	1 cut(s)	1388
BclI	TGATCA	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	105
BcuI	ACTAGT	1 cut(s)	1156
BfaI	CTAG	3 cut(s)	218, 489, 1157
BfuI	GTATCC	1 cut(s)	1388
BisI	GCNGC	2 cut(s)	753, 1047
BlsI	GCNGC	2 cut(s)	754, 1048
Bme1390I	CCNGG	1 cut(s)	1392
BmeT110I	CYCGRG	2 cut(s)	173, 1350
BmiI	GGNNCC	3 cut(s)	170, 406, 1202
BmrFI	CCNGG	1 cut(s)	1392
BmrI	ACTGGG	3 cut(s)	258, 502, 1157
BmuI	ACTGGG	3 cut(s)	258, 502, 1157
BoxI	GACNNNNGTC	2 cut(s)	264, 550
BpuEI	CTTGAG	1 cut(s)	310
Bsa29I	ATCGAT	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	1399
BsaI	GGTCTC	1 cut(s)	105
BsaJI	CCNNGG	3 cut(s)	1195, 1317, 1349
BsaWI	WCCGGW	1 cut(s)	911
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	3 cut(s)	1318, 1323, 1354
Bse1I	ACTGG	5 cut(s)	264, 508, 646, 1163, 1293
Bse8I	GATNNNNATC	1 cut(s)	1399
BseAI	TCCGGA	1 cut(s)	911
BseBI	CCWGG	1 cut(s)	1392
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	1195, 1317, 1349
BseGI	GGATG	5 cut(s)	748, 908, 940, 1285, 1456
BseJI	GATNNNNATC	1 cut(s)	1399
BseLI	CCNNNNNNNGG	3 cut(s)	1318, 1323, 1354
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	5 cut(s)	264, 508, 646, 1163, 1293
BseXI	GCAGC	2 cut(s)	764, 1058
BseYI	CCCAGC	3 cut(s)	1312, 1416, 1420
BsgI	GTGCAG	2 cut(s)	192, 771
BshFI	GGCC	1 cut(s)	950
BshNI	GGYRCC	2 cut(s)	168, 404
BshVI	ATCGAT	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	439
BsiHKCI	CYCGRG	2 cut(s)	173, 1350
BsiSI	CCGG	1 cut(s)	912
BslFI	GGGAC	1 cut(s)	1145
BslI	CCNNNNNNNGG	3 cut(s)	1318, 1323, 1354
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	1145
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	1 cut(s)	950
Bso31I	GGTCTC	1 cut(s)	105
BsoBI	CYCGRG	2 cut(s)	173, 1350
Bsp1286I	GDGCHC	2 cut(s)	439, 1263
Bsp13I	TCCGGA	1 cut(s)	911
Bsp143I	GATC	5 cut(s)	39, 423, 427, 892, 1200
BspACI	CCGC	1 cut(s)	514
BspANI	GGCC	1 cut(s)	950
BspCNI	CTCAG	1 cut(s)	320
BspDI	ATCGAT	1 cut(s)	426
BspEI	TCCGGA	1 cut(s)	911
BspLI	GGNNCC	3 cut(s)	170, 406, 1202
BspPI	GGATC	2 cut(s)	1195, 1208
BspT107I	GGYRCC	2 cut(s)	168, 404
BspTNI	GGTCTC	1 cut(s)	105
BsrI	ACTGG	5 cut(s)	264, 508, 646, 1163, 1293
BssECI	CCNNGG	3 cut(s)	1195, 1317, 1349
BssMI	GATC	5 cut(s)	39, 423, 427, 892, 1200
BssT1I	CCWWGG	1 cut(s)	1195
Bst2UI	CCWGG	1 cut(s)	1392
Bst4CI	ACNGT	4 cut(s)	60, 200, 549, 973
Bst6I	CTCTTC	1 cut(s)	1085
BstBAI	YACGTR	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	31, 477, 1468
BstDEI	CTNAG	2 cut(s)	256, 307
BstF5I	GGATG	5 cut(s)	748, 908, 940, 1285, 1456
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	5 cut(s)	42, 426, 430, 895, 1203
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	5 cut(s)	39, 423, 427, 892, 1200
BstMWI	GCNNNNNNNGC	3 cut(s)	485, 833, 1463
BstNI	CCWGG	1 cut(s)	1392
BstNSI	RCATGY	1 cut(s)	33
BstPAI	GACNNNNGTC	2 cut(s)	264, 550
BstSCI	CCNGG	1 cut(s)	1390
BstV1I	GCAGC	2 cut(s)	764, 1058
BstX2I	RGATCY	1 cut(s)	1200
BstYI	RGATCY	1 cut(s)	1200
Bsu15I	ATCGAT	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	1388
BsuRI	GGCC	1 cut(s)	950
BsuTUI	ATCGAT	1 cut(s)	426
BtsCI	GGATG	5 cut(s)	748, 908, 940, 1285, 1456
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	2 cut(s)	205, 486
Cac8I	GCNNGC	3 cut(s)	31, 477, 1468
CfoI	GCGC	1 cut(s)	184
ClaI	ATCGAT	1 cut(s)	426
CseI	GACGC	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	769, 1128
CviAII	CATG	8 cut(s)	30, 421, 440, 542, 1256, 1430, 1446, 1471
CviQI	GTAC	2 cut(s)	769, 1128
DdeI	CTNAG	2 cut(s)	256, 307
DpnI	GATC	5 cut(s)	41, 425, 429, 894, 1202
DpnII	GATC	5 cut(s)	39, 423, 427, 892, 1200
DraI	TTTAAA	1 cut(s)	811
DraIII	CACNNNGTG	2 cut(s)	202, 1014
Eam1104I	CTCTTC	1 cut(s)	1085
EarI	CTCTTC	1 cut(s)	1085
Eco130I	CCWWGG	1 cut(s)	1195
Eco24I	GRGCYC	1 cut(s)	1263
Eco31I	GGTCTC	1 cut(s)	105
Eco72I	CACGTG	1 cut(s)	131
Eco88I	CYCGRG	2 cut(s)	173, 1350
EcoRII	CCWGG	1 cut(s)	1390
EcoT14I	CCWWGG	1 cut(s)	1195
EcoT22I	ATGCAT	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	1263
ErhI	CCWWGG	1 cut(s)	1195
FaeI	CATG	8 cut(s)	33, 424, 443, 545, 1259, 1433, 1449, 1474
FaqI	GGGAC	1 cut(s)	1145
FatI	CATG	8 cut(s)	29, 420, 439, 541, 1255, 1429, 1445, 1470
FbaI	TGATCA	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	753, 1047
FokI	GGATG	5 cut(s)	755, 895, 947, 1292, 1463
FriOI	GRGCYC	1 cut(s)	1263
Fsp4HI	GCNGC	2 cut(s)	753, 1047
FspBI	CTAG	3 cut(s)	218, 489, 1157
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	2 cut(s)	753, 1047
GsaI	CCCAGC	3 cut(s)	1316, 1420, 1424
HaeIII	GGCC	1 cut(s)	950
HapII	CCGG	1 cut(s)	912
HgaI	GACGC	1 cut(s)	286
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	8 cut(s)	33, 424, 443, 545, 1259, 1433, 1449, 1474
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	2 cut(s)	615, 976
HindII	GTYRAC	2 cut(s)	615, 976
HinfI	GANTC	5 cut(s)	598, 660, 1385, 1400, 1425
HpaI	GTTAAC	1 cut(s)	615
HpaII	CCGG	1 cut(s)	912
HphI	GGTGA	4 cut(s)	361, 410, 622, 1300
Hpy166II	GTNNAC	6 cut(s)	269, 615, 630, 850, 976, 1192
Hpy188I	TCNGA	4 cut(s)	76, 1233, 1298, 1461
Hpy188III	TCNNGA	5 cut(s)	912, 1120, 1204, 1241, 1352
Hpy8I	GTNNAC	6 cut(s)	269, 615, 630, 850, 976, 1192
HpyAV	CCTTC	2 cut(s)	1141, 1259
HpyCH4III	ACNGT	4 cut(s)	60, 200, 549, 973
HpyCH4IV	ACGT	3 cut(s)	130, 611, 1107
HpyF10VI	GCNNNNNNNGC	3 cut(s)	485, 833, 1463
HpyF3I	CTNAG	2 cut(s)	256, 307
HpySE526I	ACGT	3 cut(s)	130, 611, 1107
Hsp92II	CATG	8 cut(s)	33, 424, 443, 545, 1259, 1433, 1449, 1474
HspAI	GCGC	1 cut(s)	182
Kpn2I	TCCGGA	1 cut(s)	911
Ksp22I	TGATCA	1 cut(s)	39
KspAI	GTTAAC	1 cut(s)	615
Kzo9I	GATC	5 cut(s)	39, 423, 427, 892, 1200
LmnI	GCTCC	1 cut(s)	1326
Lsp1109I	GCAGC	2 cut(s)	764, 1058
MaeI	CTAG	3 cut(s)	218, 489, 1157
MaeII	ACGT	3 cut(s)	130, 611, 1107
MaeIII	GTNAC	6 cut(s)	274, 302, 349, 577, 877, 967
MalI	GATC	5 cut(s)	41, 425, 429, 894, 1202
MboI	GATC	5 cut(s)	39, 423, 427, 892, 1200
MboII	GAAGA	7 cut(s)	185, 391, 832, 856, 1057, 1102, 1207
MflI	RGATCY	1 cut(s)	1200
MhlI	GDGCHC	2 cut(s)	439, 1263
MluCI	AATT	7 cut(s)	34, 123, 298, 620, 1000, 1236, 1245
MlyI	GAGTC	2 cut(s)	1379, 1434
MmeI	TCCRAC	2 cut(s)	430, 1012
Mph1103I	ATGCAT	1 cut(s)	31
MroI	TCCGGA	1 cut(s)	911
MseI	TTAA	4 cut(s)	138, 614, 810, 860
MslI	CAYNNNNRTG	1 cut(s)	1254
MspA1I	CMGCKG	1 cut(s)	1420
MspI	CCGG	1 cut(s)	912
MspR9I	CCNGG	1 cut(s)	1392
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	1392
MwoI	GCNNNNNNNGC	3 cut(s)	485, 833, 1463
NdeII	GATC	5 cut(s)	39, 423, 427, 892, 1200
NlaIII	CATG	8 cut(s)	33, 424, 443, 545, 1259, 1433, 1449, 1474
NlaIV	GGNNCC	3 cut(s)	170, 406, 1202
NmeAIII	GCCGAG	1 cut(s)	1342
NmuCI	GTSAC	4 cut(s)	274, 349, 877, 967
NsiI	ATGCAT	1 cut(s)	31
NspI	RCATGY	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	33
PaeR7I	CTCGAG	1 cut(s)	173
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	598, 660, 1400
PkrI	GCNGC	2 cut(s)	754, 1048
PleI	GAGTC	2 cut(s)	1379, 1433
PmaCI	CACGTG	1 cut(s)	131
PmlI	CACGTG	1 cut(s)	131
PpsI	GAGTC	2 cut(s)	1379, 1433
Ppu21I	YACGTR	1 cut(s)	131
PshAI	GACNNNNGTC	2 cut(s)	264, 550
Psp6I	CCWGG	1 cut(s)	1390
PspCI	CACGTG	1 cut(s)	131
PspFI	CCCAGC	3 cut(s)	1312, 1416, 1420
PspGI	CCWGG	1 cut(s)	1390
PspN4I	GGNNCC	3 cut(s)	170, 406, 1202
PspXI	VCTCGAGB	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	1200
PvuII	CAGCTG	1 cut(s)	1420
RsaI	GTAC	2 cut(s)	770, 1129
RsaNI	GTAC	2 cut(s)	769, 1128
RseI	CAYNNNNRTG	1 cut(s)	1254
SaqAI	TTAA	4 cut(s)	138, 614, 810, 860
SatI	GCNGC	2 cut(s)	753, 1047
Sau3AI	GATC	5 cut(s)	39, 423, 427, 892, 1200
SchI	GAGTC	2 cut(s)	1379, 1434
ScrFI	CCNGG	1 cut(s)	1392
SduI	GDGCHC	2 cut(s)	439, 1263
Sfr274I	CTCGAG	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	1254
SmlI	CTYRAG	2 cut(s)	173, 289
SmoI	CTYRAG	2 cut(s)	173, 289
SpeI	ACTAGT	1 cut(s)	1156
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	7 cut(s)	34, 123, 298, 620, 1000, 1236, 1245
SsiI	CCGC	1 cut(s)	514
SspMI	CTAG	3 cut(s)	218, 489, 1157
StyD4I	CCNGG	1 cut(s)	1390
StyI	CCWWGG	1 cut(s)	1195
TaaI	ACNGT	4 cut(s)	60, 200, 549, 973
TaiI	ACGT	3 cut(s)	133, 614, 1110
TaqI	TCGA	4 cut(s)	174, 322, 426, 1224
TasI	AATT	7 cut(s)	34, 123, 298, 620, 1000, 1236, 1245
TfiI	GAWTC	3 cut(s)	598, 660, 1400
Tru1I	TTAA	4 cut(s)	138, 614, 810, 860
Tru9I	TTAA	4 cut(s)	138, 614, 810, 860
TscAI	CASTG	2 cut(s)	205, 486
TseFI	GTSAC	4 cut(s)	274, 349, 877, 967
TseI	GCWGC	2 cut(s)	752, 1046
Tsp45I	GTSAC	4 cut(s)	274, 349, 877, 967
TspDTI	ATGAA	6 cut(s)	63, 68, 873, 1051, 1057, 1487
TspGWI	ACGGA	1 cut(s)	835
TspRI	CASTG	2 cut(s)	205, 486
XapI	RAATTY	1 cut(s)	1245
XceI	RCATGY	1 cut(s)	33
XhoI	CTCGAG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	268
XspI	CTAG	3 cut(s)	218, 489, 1157
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.