Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0029277

Physical Location & Seq

Genomic Coordinates Reverse (-)

8393153 .. 8393587

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCCTCGGACTTGCCCAATTCGCCGGCAGCCAGTCGGAATCCAAGTTTTGGTGTAAGTAAAGGGAAGAAAATGGTGTTGACACCACTGGTTGGGAAGATTCCGAGCAAAGGGTTGAAGAAGAAGATGAGGTTATCTGGGGAGGTTAATGGCGATCTTTGCAAAGATGTGACTGCAATGGAGAAGAAGGTGGATGTGTGCGATGATGCTATGGCGGTGGGTTTAGAGATTGTCCGTTGCCAACACAAAAGAGTGGTCTTTTGCATTCGGGTGACCGCCAAAAGGCCAAGCAAGTTTGGAGGAGGCATGTTTGGATCCTTGACTTGTTTGTTTGCGCCATGTTGTTTGGGATTTGGTTGTGGGTTTGCAGGGGATTCAAGTGCATTGACGGTTGAATGGGTGGATTTGGGAGGTTTTGGTGTTTCGGTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.13

Weight (kDa)

9.22

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029277)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g18550 pycom13g12140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	50, 92
AciI	CCGC	2 cut(s)	215, 276
AclWI	GGATC	2 cut(s)	309, 322
AfiI	CCNNNNNNNGG	4 cut(s)	50, 92, 110, 282
AgsI	TTSAA	3 cut(s)	118, 378, 395
AlwI	GGATC	2 cut(s)	309, 322
AoxI	GGCC	2 cut(s)	3, 284
ApeKI	GCWGC	1 cut(s)	29
ArsI	GACNNNNNNTTYG	2 cut(s)	240, 272
AspLEI	GCGC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	283
BamHI	GGATCC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	316
BmsI	GCATC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 92, 110, 282
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	33, 93
Bse3DI	GCAATG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	4 cut(s)	50, 92, 110, 282
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	33, 93
BseRI	GAGGAG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	41
BshFI	GGCC	2 cut(s)	5, 286
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	4 cut(s)	50, 92, 110, 282
BsmI	GAATGC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	5, 286
Bsp143I	GATC	2 cut(s)	154, 314
BspACI	CCGC	2 cut(s)	215, 276
BspANI	GGCC	2 cut(s)	5, 286
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	2 cut(s)	309, 322
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	33, 93
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	154, 314
Bst4CI	ACNGT	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	2 cut(s)	157, 317
BstMBI	GATC	2 cut(s)	154, 314
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 159
BstNSI	RCATGY	1 cut(s)	310
BstPI	GGTNACC	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	5, 286
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	25
CviAII	CATG	2 cut(s)	307, 339
CviJI	RGCY	3 cut(s)	5, 32, 286
CviKI_1	RGCY	3 cut(s)	5, 32, 286
DpnI	GATC	2 cut(s)	156, 316
DpnII	GATC	2 cut(s)	154, 314
Eco91I	GGTNACC	1 cut(s)	271
EcoO65I	GGTNACC	1 cut(s)	271
FaeI	CATG	2 cut(s)	310, 342
FaiI	YATR	3 cut(s)	212, 308, 340
FatI	CATG	2 cut(s)	306, 338
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	30
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	5, 286
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	2 cut(s)	310, 342
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	3 cut(s)	40, 100, 374
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	3 cut(s)	10, 39, 105
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	5 cut(s)	162, 176, 264, 368, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 159
Hsp92II	CATG	2 cut(s)	310, 342
HspAI	GCGC	1 cut(s)	335
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	154, 314
LpnPI	CCDG	5 cut(s)	39, 46, 74, 123, 354
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	169, 271
MalI	GATC	2 cut(s)	156, 316
MboI	GATC	2 cut(s)	154, 314
MboII	GAAGA	6 cut(s)	79, 109, 130, 133, 136, 196
MflI	RGATCY	1 cut(s)	314
MluCI	AATT	1 cut(s)	19
MmeI	TCCRAC	1 cut(s)	17
MnlI	CCTC	6 cut(s)	16, 123, 136, 293, 296, 404
MroNI	GCCGGC	1 cut(s)	25
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	22, 159
NaeI	GCCGGC	1 cut(s)	27
NdeII	GATC	2 cut(s)	154, 314
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	310, 342
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	2 cut(s)	169, 271
NspI	RCATGY	1 cut(s)	310
PctI	GAATGC	1 cut(s)	264
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	3 cut(s)	40, 100, 374
PflMI	CCANNNNNTGG	2 cut(s)	50, 92
PkrI	GCNGC	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	154, 314
SetI	ASST	4 cut(s)	134, 147, 192, 415
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	2 cut(s)	215, 276
TaaI	ACNGT	1 cut(s)	391
TasI	AATT	1 cut(s)	19
TfiI	GAWTC	3 cut(s)	40, 100, 374
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	2 cut(s)	169, 271
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	2 cut(s)	169, 271
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	93
Van91I	CCANNNNNTGG	2 cut(s)	50, 92
XceI	RCATGY	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.