Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0029441

Physical Location & Seq

Genomic Coordinates Reverse (-)

8454893 .. 8456717

Gene Structure 1825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGATTAAGGCGATCAAGGTAAGACACAACAATGTTGTCCCAATGATGGCTTTGGGTGTTCAGCAGTTGAAGAAAGAGAAGGTTCTCTACGAGGATCTTGATGAGATTCACCAATTTTTGGATCGCTTCTACCTGTCAAGAATTGGGATTCGCATGCTCATTGGCCAGCATGTTGAGTTGCACAATCCCAATCCCCCTCCTCATTGCGTGGGTTATATAGATACAAAGATGTCTCCTGTGGAGGTAGCACGAAATGCCACTGAGGATGCCCGTGCAATGTGCCTGCGTGAGTATGGAAGCGCACCTGATGTTACTATCTATGGGGATCCCGATTTTACATTCCCGTATGTTCCAACACACCTGCATACCATGGTCTTTGAGTTGGTTAAGAATTCCTTGCGTGCTGTCCAAGAGCGTTTCATGGACTCGGATATAGTTGCGCCTCCTGTTAGAATAATAGTTGCTGATGGAATTGAGGATGTCACTATCAAGGTCTCGGATGAGGGTGGTGGCATACGAAGAAGTGGTCTCCCCAAGATTTTTACATATCTTTACAGCACTGCAAGTAACCCTTTGGAATCAGATCTTTCGGAAGCTGATGCAGTTACAATGGCTGGATATGGATATGGGCTTCCTATAAGCCGCTTGTATGCGAGGTACTTTGGAGGGGACTTACAAATTATCTCTATGGAAGGATACGGGACGGACGCGTATCTGCATTTGTCTCGCTTGGGAGATTCTCAGGAACCATTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004740 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006090 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009927 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019752 GO:0023052 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0035639 GO:0036094 GO:0036211 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BCDHK_Adom3 HATPase_c

Protein Analysis

253

Amino Acids

28.21

Weight (kDa)

5.35

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCDHK_Adom3	PF10436	1 - 74	1.2e-21	Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
HATPase_c	PF02518	118 - 241	1.3e-14	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029441)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g12230
rosa_multiflora	Rmu_co8447569.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	369
Acc36I	ACCTGC	1 cut(s)	369
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccII	CGCG	1 cut(s)	710
AciI	CCGC	1 cut(s)	643
AclWI	GGATC	4 cut(s)	102, 129, 320, 333
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	391
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	2 cut(s)	46, 118
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	1 cut(s)	596
AluI	AGCT	1 cut(s)	596
Alw26I	GTCTC	4 cut(s)	237, 499, 533, 729
AlwI	GGATC	4 cut(s)	102, 129, 320, 333
AoxI	GGCC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	391
ArsI	GACNNNNNNTTYG	2 cut(s)	511, 543
AspLEI	GCGC	2 cut(s)	302, 442
AsuHPI	GGTGA	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	325
BarI	GAAGNNNNNNTAC	2 cut(s)	71, 103
BccI	CCATC	2 cut(s)	40, 461
BcgI	CGANNNNNNTGC	2 cut(s)	707, 741
BciVI	GTATCC	1 cut(s)	689
BcoDI	GTCTC	4 cut(s)	237, 499, 533, 729
BfuAI	ACCTGC	1 cut(s)	369
BfuI	GTATCC	1 cut(s)	689
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	1 cut(s)	643
BlsI	GCNGC	1 cut(s)	644
BmiI	GGNNCC	2 cut(s)	327, 747
BmsI	GCATC	2 cut(s)	256, 589
BsaI	GGTCTC	2 cut(s)	499, 533
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 118
Bse3DI	GCAATG	3 cut(s)	202, 282, 749
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	3 cut(s)	271, 484, 505
BseLI	CCNNNNNNNGG	2 cut(s)	46, 118
BseMI	GCAATG	3 cut(s)	202, 282, 749
BseMII	CTCAG	2 cut(s)	252, 755
BseRI	GAGGAG	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	710
BshFI	GGCC	1 cut(s)	165
BslFI	GGGAC	3 cut(s)	23, 683, 715
BslI	CCNNNNNNNGG	2 cut(s)	46, 118
BsmAI	GTCTC	4 cut(s)	237, 499, 533, 729
BsmFI	GGGAC	3 cut(s)	23, 683, 715
BsnI	GGCC	1 cut(s)	165
Bso31I	GGTCTC	2 cut(s)	499, 533
Bsp143I	GATC	5 cut(s)	12, 94, 121, 325, 583
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	1 cut(s)	643
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	253, 754
BspFNI	CGCG	1 cut(s)	710
BspLI	GGNNCC	2 cut(s)	327, 747
BspMI	ACCTGC	1 cut(s)	369
BspPI	GGATC	4 cut(s)	102, 129, 320, 333
BspTNI	GGTCTC	2 cut(s)	499, 533
BsrDI	GCAATG	3 cut(s)	202, 282, 749
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	5 cut(s)	12, 94, 121, 325, 583
BssT1I	CCWWGG	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	4 cut(s)	155, 167, 284, 402
BstDEI	CTNAG	2 cut(s)	261, 741
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	3 cut(s)	271, 484, 505
BstFNI	CGCG	1 cut(s)	710
BstHHI	GCGC	2 cut(s)	302, 442
BstKTI	GATC	5 cut(s)	15, 97, 124, 328, 586
BstMAI	GTCTC	4 cut(s)	237, 499, 533, 729
BstMBI	GATC	5 cut(s)	12, 94, 121, 325, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNSI	RCATGY	2 cut(s)	157, 173
BstUI	CGCG	1 cut(s)	710
BstX2I	RGATCY	3 cut(s)	94, 325, 583
BstYI	RGATCY	3 cut(s)	94, 325, 583
BsuI	GTATCC	1 cut(s)	689
BsuRI	GGCC	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	271, 484, 505
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	258, 558
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	4 cut(s)	155, 167, 284, 402
CfoI	GCGC	2 cut(s)	302, 442
CseI	GACGC	1 cut(s)	716
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	5 cut(s)	154, 170, 370, 421, 756
CviJI	RGCY	6 cut(s)	50, 165, 596, 614, 631, 642
CviKI_1	RGCY	6 cut(s)	50, 165, 596, 614, 631, 642
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	2 cut(s)	261, 741
DpnI	GATC	5 cut(s)	14, 96, 123, 327, 585
DpnII	GATC	5 cut(s)	12, 94, 121, 325, 583
EaeI	YGGCCR	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	369
Eco31I	GGTCTC	2 cut(s)	499, 533
EcoRI	GAATTC	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	5 cut(s)	157, 173, 373, 424, 759
FalI	AAGNNNNNCTT	4 cut(s)	380, 412, 556, 588
FaqI	GGGAC	3 cut(s)	23, 683, 715
FatI	CATG	5 cut(s)	153, 169, 369, 420, 755
Fnu4HI	GCNGC	1 cut(s)	643
FokI	GGATG	3 cut(s)	278, 491, 512
Fsp4HI	GCNGC	1 cut(s)	643
GlaI	GCGC	2 cut(s)	301, 441
GluI	GCNGC	1 cut(s)	643
HaeIII	GGCC	1 cut(s)	165
HgaI	GACGC	1 cut(s)	716
HhaI	GCGC	2 cut(s)	302, 442
Hin1II	CATG	5 cut(s)	157, 173, 373, 424, 759
Hin6I	GCGC	2 cut(s)	300, 440
HinP1I	GCGC	2 cut(s)	300, 440
HinfI	GANTC	5 cut(s)	106, 148, 425, 578, 737
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	4 cut(s)	430, 499, 583, 592
Hpy188III	TCNNGA	4 cut(s)	98, 138, 329, 743
HpyAV	CCTTC	2 cut(s)	73, 686
HpyCH4V	TGCA	6 cut(s)	181, 275, 364, 563, 602, 718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	261, 741
Hsp92II	CATG	5 cut(s)	157, 173, 373, 424, 759
HspAI	GCGC	2 cut(s)	300, 440
Kzo9I	GATC	5 cut(s)	12, 94, 121, 325, 583
LpnPI	CCDG	9 cut(s)	146, 179, 249, 296, 318, 374, 459, 600, 728
LweI	GCATC	2 cut(s)	256, 589
MaeIII	GTNAC	4 cut(s)	310, 481, 566, 604
MalI	GATC	5 cut(s)	14, 96, 123, 327, 585
MboI	GATC	5 cut(s)	12, 94, 121, 325, 583
MboII	GAAGA	2 cut(s)	82, 531
MflI	RGATCY	3 cut(s)	94, 325, 583
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	5 cut(s)	113, 141, 391, 471, 678
MluI	ACGCGT	1 cut(s)	708
MluNI	TGGCCA	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	377
Mox20I	TGGCCA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	2 cut(s)	6, 387
MslI	CAYNNNNRTG	2 cut(s)	30, 754
Msp20I	TGGCCA	1 cut(s)	165
MvnI	CGCG	1 cut(s)	710
MwoI	GCNNNNNNNGC	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	5 cut(s)	12, 94, 121, 325, 583
NlaIII	CATG	5 cut(s)	157, 173, 373, 424, 759
NlaIV	GGNNCC	2 cut(s)	327, 747
NmuCI	GTSAC	1 cut(s)	481
NspI	RCATGY	2 cut(s)	157, 173
PaeI	GCATGC	1 cut(s)	157
PaqCI	CACCTGC	1 cut(s)	369
PfeI	GAWTC	4 cut(s)	106, 148, 578, 737
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	644
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	327, 747
PsuI	RGATCY	3 cut(s)	94, 325, 583
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
RseI	CAYNNNNRTG	2 cut(s)	30, 754
SaqAI	TTAA	2 cut(s)	6, 387
SatI	GCNGC	1 cut(s)	643
Sau3AI	GATC	5 cut(s)	12, 94, 121, 325, 583
SchI	GAGTC	1 cut(s)	419
SetI	ASST	9 cut(s)	21, 84, 135, 246, 307, 363, 495, 598, 659
SfaNI	GCATC	2 cut(s)	256, 589
SmiMI	CAYNNNNRTG	2 cut(s)	30, 754
SphI	GCATGC	1 cut(s)	157
Sse9I	AATT	5 cut(s)	113, 141, 391, 471, 678
SsiI	CCGC	1 cut(s)	643
StyI	CCWWGG	1 cut(s)	369
TasI	AATT	5 cut(s)	113, 141, 391, 471, 678
TauI	GCSGC	1 cut(s)	645
TfiI	GAWTC	4 cut(s)	106, 148, 578, 737
Tru1I	TTAA	2 cut(s)	6, 387
Tru9I	TTAA	2 cut(s)	6, 387
TscAI	CASTG	2 cut(s)	265, 565
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	1 cut(s)	409
TspGWI	ACGGA	1 cut(s)	719
TspRI	CASTG	2 cut(s)	265, 565
Van91I	CCANNNNNTGG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	391
XceI	RCATGY	2 cut(s)	157, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.