Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8447569.1

Orthogroup ID

OG0029441

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1218

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8447569.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

gactggtatttggattccttccgcgacctgagatcctttcctgacatcaaggatgaaaatgatgagaaggattttacacaaatgatcaaggcgatcaaggtgagacacaacaatgtcgttcccacgatggctttaggtgttcaccagttgaagaaaggcattaatccaaagattgtctatgaggatcttgatgagattcaccaatttttggatcgcttctacatgtcgagaattggaattcgcatgctgatcggccagcatgttgagttgcacaatcccaatccccctcctcattgtgtgggttacatacatacaaaaatgtctccactggaggtagcacgaaatgccagtgaggatgctcgctcgatttgctttcatgagtatggcagtgcacctaacgtcaacatctatggggatcctgattttaccttcccatatgttcctacacacttacatcttatggtctttgagttggttaagaattctctgcgtgctgtccaagagcgttttatggactcagacaaagttgcacctcctattagaattatagttgctgatggaattgaagatgttacgatcaaggtctcggatgagggcggtggcatacgaagaagtggactccccaaaattttcacatatctttatagcactgcagcgaaccatgtggatgagcagacagatcttgggactactgattcagttacaatggctggatatgggtacgggcttcctataagccgcttgtatgctaggtattttggaggagatctgcaagtaatctctatggaaggatacggtgagttgagtagttttcaatctggttgcattcatattatcctacactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004740 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006090 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009927 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0019752 GO:0023052 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0035639 GO:0036094 GO:0036211 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BCDHK_Adom3 HATPase_c

Protein Analysis

281

Amino Acids

31.84

Weight (kDa)

5.68

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029441)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g12230
rosa_multiflora	Rmu_co8447569.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AccII	CGCG	1 cut(s)	24
AciI	CCGC	3 cut(s)	22, 597, 739
AclWI	GGATC	5 cut(s)	27, 192, 219, 410, 423
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	3 cut(s)	237, 481, 627
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	3 cut(s)	151, 566, 815
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	3 cut(s)	97, 327, 589
Alw44I	GTGCAC	1 cut(s)	390
AlwI	GGATC	5 cut(s)	27, 192, 219, 410, 423
AoxI	GGCC	1 cut(s)	253
ApaLI	GTGCAC	1 cut(s)	390
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	3 cut(s)	237, 481, 627
AseI	ATTAAT	1 cut(s)	162
AsuHPI	GGTGA	4 cut(s)	112, 134, 191, 809
BaeGI	GKGCMC	1 cut(s)	394
BamHI	GGATCC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	665
BccI	CCATC	2 cut(s)	121, 551
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BciVI	GTATCC	1 cut(s)	785
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	3 cut(s)	97, 327, 589
BfaI	CTAG	1 cut(s)	750
BfmI	CTRYAG	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	785
BglII	AGATCT	2 cut(s)	679, 766
BisI	GCNGC	2 cut(s)	654, 739
BlsI	GCNGC	2 cut(s)	655, 740
BmiI	GGNNCC	1 cut(s)	417
BmsI	GCATC	1 cut(s)	346
BpmI	CTGGAG	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	4 cut(s)	8, 145, 333, 348
BseGI	GGATG	4 cut(s)	58, 361, 595, 673
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	20, 531
BseNI	ACTGG	4 cut(s)	8, 145, 333, 348
BseRI	GAGGAG	2 cut(s)	279, 777
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	665
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	700
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	3 cut(s)	97, 327, 589
BsmFI	GGGAC	1 cut(s)	700
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	589
Bsp1286I	GDGCHC	1 cut(s)	394
BspACI	CCGC	3 cut(s)	22, 597, 739
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	2 cut(s)	21, 530
BspFNI	CGCG	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	417
BspMAI	CTGCAG	1 cut(s)	655
BspPI	GGATC	5 cut(s)	27, 192, 219, 410, 423
BspTNI	GGTCTC	1 cut(s)	589
BsrI	ACTGG	4 cut(s)	8, 145, 333, 348
Bst4CI	ACNGT	1 cut(s)	797
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	4 cut(s)	245, 257, 361, 492
BstDEI	CTNAG	2 cut(s)	29, 517
BstF5I	GGATG	4 cut(s)	58, 361, 595, 673
BstFNI	CGCG	1 cut(s)	24
BstMAI	GTCTC	3 cut(s)	97, 327, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 369
BstNSI	RCATGY	3 cut(s)	226, 247, 263
BstSFI	CTRYAG	1 cut(s)	651
BstSLI	GKGCMC	1 cut(s)	394
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	665
BstX2I	RGATCY	5 cut(s)	32, 184, 415, 679, 766
BstYI	RGATCY	5 cut(s)	32, 184, 415, 679, 766
BsuI	GTATCC	1 cut(s)	785
BsuRI	GGCC	1 cut(s)	255
BtsCI	GGATG	4 cut(s)	58, 361, 595, 673
BtsI	GCAGTG	2 cut(s)	394, 648
BtsIMutI	CAGTG	5 cut(s)	326, 355, 394, 648, 841
Cac8I	GCNNGC	4 cut(s)	245, 257, 361, 492
CciI	TCATGA	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	5 cut(s)	223, 244, 260, 377, 662
CviJI	RGCY	5 cut(s)	131, 255, 710, 727, 738
CviKI_1	RGCY	5 cut(s)	131, 255, 710, 727, 738
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	2 cut(s)	29, 517
EaeI	YGGCCR	1 cut(s)	253
Eco31I	GGTCTC	1 cut(s)	589
EcoRI	GAATTC	2 cut(s)	237, 481
FaeI	CATG	5 cut(s)	226, 247, 263, 380, 665
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	5 cut(s)	222, 243, 259, 376, 661
FauNDI	CATATG	1 cut(s)	436
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	654, 739
FokI	GGATG	4 cut(s)	65, 368, 602, 680
Fsp4HI	GCNGC	2 cut(s)	654, 739
FspBI	CTAG	1 cut(s)	750
GluI	GCNGC	2 cut(s)	654, 739
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	255
Hin1II	CATG	5 cut(s)	226, 247, 263, 380, 665
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	5 cut(s)	14, 196, 515, 618, 695
HphI	GGTGA	4 cut(s)	112, 134, 191, 809
Hpy166II	GTNNAC	4 cut(s)	142, 392, 403, 617
Hpy188I	TCNGA	2 cut(s)	520, 589
Hpy188III	TCNNGA	5 cut(s)	41, 188, 228, 377, 419
Hpy8I	GTNNAC	4 cut(s)	142, 392, 403, 617
HpyAV	CCTTC	4 cut(s)	28, 61, 439, 782
HpyCH4III	ACNGT	1 cut(s)	797
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	6 cut(s)	271, 392, 530, 653, 772, 825
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 369
HpyF3I	CTNAG	2 cut(s)	29, 517
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	5 cut(s)	226, 247, 263, 380, 665
Ksp22I	TGATCA	1 cut(s)	84
LpnPI	CCDG	9 cut(s)	41, 54, 158, 269, 314, 361, 432, 696, 804
Lsp1109I	GCAGC	1 cut(s)	665
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	750
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	3 cut(s)	302, 571, 700
MboII	GAAGA	3 cut(s)	163, 578, 621
MflI	RGATCY	5 cut(s)	32, 184, 415, 679, 766
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	7 cut(s)	203, 231, 237, 481, 543, 561, 627
MlyI	GAGTC	2 cut(s)	509, 612
MnlI	CCTC	8 cut(s)	175, 297, 300, 325, 346, 543, 586, 755
MseI	TTAA	2 cut(s)	162, 477
MslI	CAYNNNNRTG	3 cut(s)	111, 381, 666
Mva1269I	GAATGC	1 cut(s)	825
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	344, 369
NdeI	CATATG	1 cut(s)	436
NlaIII	CATG	5 cut(s)	226, 247, 263, 380, 665
NlaIV	GGNNCC	1 cut(s)	417
NspI	RCATGY	3 cut(s)	226, 247, 263
PaeI	GCATGC	1 cut(s)	247
PagI	TCATGA	1 cut(s)	376
PciI	ACATGT	1 cut(s)	222
PctI	GAATGC	1 cut(s)	825
PfeI	GAWTC	3 cut(s)	14, 196, 695
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	655, 740
PleI	GAGTC	2 cut(s)	509, 612
PpsI	GAGTC	2 cut(s)	509, 612
PscI	ACATGT	1 cut(s)	222
PshBI	ATTAAT	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	655
PsuI	RGATCY	5 cut(s)	32, 184, 415, 679, 766
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	3 cut(s)	111, 381, 666
SaqAI	TTAA	2 cut(s)	162, 477
SatI	GCNGC	2 cut(s)	654, 739
SchI	GAGTC	2 cut(s)	509, 612
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	651
SmiMI	CAYNNNNRTG	3 cut(s)	111, 381, 666
SphI	GCATGC	1 cut(s)	247
Sse9I	AATT	7 cut(s)	203, 231, 237, 481, 543, 561, 627
SsiI	CCGC	3 cut(s)	22, 597, 739
SspMI	CTAG	1 cut(s)	750
TaaI	ACNGT	1 cut(s)	797
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	227, 365
TasI	AATT	7 cut(s)	203, 231, 237, 481, 543, 561, 627
TauI	GCSGC	1 cut(s)	741
TfiI	GAWTC	3 cut(s)	14, 196, 695
Tru1I	TTAA	2 cut(s)	162, 477
Tru9I	TTAA	2 cut(s)	162, 477
TscAI	CASTG	4 cut(s)	333, 355, 394, 655
TseI	GCWGC	1 cut(s)	653
TspDTI	ATGAA	3 cut(s)	69, 365, 818
TspRI	CASTG	4 cut(s)	333, 355, 394, 655
Van91I	CCANNNNNTGG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	390
VspI	ATTAAT	1 cut(s)	162
XapI	RAATTY	3 cut(s)	237, 481, 627
XceI	RCATGY	3 cut(s)	226, 247, 263
XspI	CTAG	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.