Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0028233

Physical Location & Seq

Genomic Coordinates Reverse (-)

8679812 .. 8680650

Gene Structure 839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCTGTTTTCAGGTTGTTTTTGCTCAGAACAACAGCCACTACTTTGTTTTTCAAGAGCGACGCACAGGCAAAGGACAATGTCTATCAATGTGGTAAAGGATCCTGTTATGTACAAGAATACTTGGAGGATTGACAACTTCTCAAAGCTAGACGCCGAATCCTACAACTCAAAAGTATTTACTGCCGGAGACCTGAAATGGAAGATACAGCTCTATCCCAAGTTAAAAAGGCAATGGAGTTGGTGCCCATTTGGCTCTTTATTTGGCGTTAGCCGAATCAAAATCTCTTCCTCCTGGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

101

Amino Acids

11.76

Weight (kDa)

9.78

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	41 - 79	4e-09	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0028233)

Species	Orthologous Gene IDs
malus_domestica	MD13G1142600.v1.1
pyrus_communis	pycom13g12420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AclWI	GGATC	2 cut(s)	95, 108
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	54
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	2 cut(s)	148, 211
AluI	AGCT	2 cut(s)	148, 211
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	2 cut(s)	95, 108
BaeGI	GKGCMC	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	149
BglI	GCCNNNNNGGC	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	102, 245
BmrFI	CCNGG	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	183
Bso31I	GGTCTC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	102, 245
BspPI	GGATC	2 cut(s)	95, 108
BspT107I	GGYRCC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	111
BssMI	GATC	1 cut(s)	100
BssNI	GRCGYC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	292
BstACI	GRCGYC	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	25
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
CseI	GACGC	2 cut(s)	70, 161
Csp6I	GTAC	1 cut(s)	112
CviJI	RGCY	6 cut(s)	37, 148, 211, 255, 273, 298
CviKI_1	RGCY	6 cut(s)	37, 148, 211, 255, 273, 298
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	293
FaiI	YATR	1 cut(s)	110
FspBI	CTAG	1 cut(s)	149
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	2 cut(s)	70, 161
Hin1I	GRCGYC	1 cut(s)	153
HinfI	GANTC	2 cut(s)	158, 276
HpaII	CCGG	1 cut(s)	186
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	1 cut(s)	54
Hpy99I	CGWCG	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	1 cut(s)	25
Hsp92I	GRCGYC	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	5 cut(s)	52, 117, 199, 206, 280
MaeI	CTAG	1 cut(s)	149
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	214, 279
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	248
MnlI	CCTC	2 cut(s)	120, 301
MseI	TTAA	1 cut(s)	224
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	252
NdeII	GATC	1 cut(s)	100
NlaIV	GGNNCC	2 cut(s)	102, 245
PfeI	GAWTC	2 cut(s)	158, 276
PflFI	GACNNNGTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	102, 245
PsuI	RGATCY	1 cut(s)	100
PsyI	GACNNNGTC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	224
Sau3AI	GATC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	4 cut(s)	16, 150, 195, 213
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	293
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	158, 276
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
Tth111I	GACNNNGTC	1 cut(s)	79
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.