Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0028274

Physical Location & Seq

Genomic Coordinates Forward (+)

9654691 .. 9655494

Gene Structure 804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCGGATTCAAAATCAAATGGGAAGAGAGGGGAAGTGTGGGTTCCCGTTGAGACAAAGACAAAGACAAAGGACCCTTTATCTCCAAACGTTACTAATTCTTAAAAACGCATTTATTGCCTTTTACAACACTTCTTCAAAATATACAGCTTCTACTAAGCTGTATTTACACACTCTCTCTCTCTCTCTCTCTCTCTACGCGTTTGAAAAAAAGCACACGCCGAAACTCACAAATATAAACACACACTCTCTCTCTCTCCAAATTCAAAAACCCAAACTTTCGAGTCCCCACAAGACCGCAAAAGCCATGGACTCGAGCTCCAGGAACTGGCCTCCGATCTTGGCCCTCAATCTTCTCCTTATTTTCACGATCCTCCCCTACTCACTCGCCCAATCCACCGCCCAAGCTCCGCCGCCGGCCTCCGACTCCTGCAACGGCGTCTTCCTGTCGTACGCCTACACCACCGGAGCCCAGCTCCCGCCCGAGGTCAAAGACCGGTCCCAGCAGCCCTACCGGTTCGAGTCCGTGCTTACGGTGCTCAACAACGGGCTCGACGATCGATCAAGTCGTGGAGGGTGTTTGTGGGGTTTACTAACAATGAGTACTTGGTCTCTGCCTCCAATGCCGTTTTGGCCGACGGGGGTAGCATTCCTGGGAGTGTGGGAAACGGCACCGTTTTTGCTGGGTATCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0031224 GO:0031225 GO:0031226 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048364 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0071695 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

232

Amino Acids

25.93

Weight (kDa)

9.97

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028274)

Species	Orthologous Gene IDs
malus_domestica	MD13G1159500.v1.1
pyrus_communis	pycom13g13590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	670
AccB7I	CCANNNNNTGG	1 cut(s)	327
AccII	CGCG	1 cut(s)	200
AciI	CCGC	6 cut(s)	4, 297, 399, 410, 413, 479
AclI	AACGTT	1 cut(s)	89
AclWI	GGATC	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	632
AcsI	RAATTY	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	2 cut(s)	452, 604
AfiI	CCNNNNNNNGG	2 cut(s)	327, 484
AflIII	ACRYGT	1 cut(s)	198
AgeI	ACCGGT	2 cut(s)	495, 513
AgsI	TTSAA	4 cut(s)	11, 138, 206, 266
AjnI	CCWGG	2 cut(s)	320, 651
AluBI	AGCT	5 cut(s)	149, 160, 318, 407, 475
AluI	AGCT	5 cut(s)	149, 160, 318, 407, 475
Alw21I	GWGCWC	2 cut(s)	320, 540
Alw26I	GTCTC	2 cut(s)	46, 615
AlwI	GGATC	1 cut(s)	364
AlwNI	CAGNNNCTG	1 cut(s)	327
Ama87I	CYCGRG	2 cut(s)	313, 482
AoxI	GGCC	4 cut(s)	329, 342, 417, 632
ApeKI	GCWGC	1 cut(s)	505
ApoI	RAATTY	1 cut(s)	261
AsiGI	ACCGGT	2 cut(s)	495, 513
AspS9I	GGNCC	3 cut(s)	72, 343, 498
AvaI	CYCGRG	2 cut(s)	313, 482
AvaII	GGWCC	2 cut(s)	72, 498
BanI	GGYRCC	1 cut(s)	670
BanII	GRGCYC	3 cut(s)	320, 472, 552
BbsI	GAAGAC	1 cut(s)	433
Bbv12I	GWGCWC	2 cut(s)	320, 540
BbvI	GCAGC	1 cut(s)	517
BceAI	ACGGC	3 cut(s)	451, 610, 684
BciT130I	CCWGG	2 cut(s)	322, 653
BcoDI	GTCTC	2 cut(s)	46, 615
BglI	GCCNNNNNGGC	1 cut(s)	631
BisI	GCNGC	2 cut(s)	413, 506
BlsI	GCNGC	2 cut(s)	414, 507
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	2 cut(s)	322, 653
Bme18I	GGWCC	2 cut(s)	72, 498
BmeT110I	CYCGRG	2 cut(s)	313, 482
BmgT120I	GGNCC	3 cut(s)	72, 343, 498
BmiI	GGNNCC	5 cut(s)	44, 74, 469, 500, 672
BmrFI	CCNGG	2 cut(s)	322, 653
BpiI	GAAGAC	1 cut(s)	433
BplI	GAGNNNNNCTC	2 cut(s)	459, 491
BpmI	CTGGAG	1 cut(s)	304
Bsa29I	ATCGAT	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	615
BsaJI	CCNNGG	3 cut(s)	306, 483, 652
BsaWI	WCCGGW	3 cut(s)	464, 495, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 484
Bse118I	RCCGGY	3 cut(s)	415, 495, 513
Bse1I	ACTGG	1 cut(s)	332
BseBI	CCWGG	2 cut(s)	322, 653
BseCI	ATCGAT	1 cut(s)	559
BseDI	CCNNGG	3 cut(s)	306, 483, 652
BseLI	CCNNNNNNNGG	2 cut(s)	327, 484
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	517
BseYI	CCCAGC	3 cut(s)	471, 501, 682
Bsh1236I	CGCG	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	559
BshFI	GGCC	4 cut(s)	331, 344, 419, 634
BshNI	GGYRCC	1 cut(s)	670
BshTI	ACCGGT	2 cut(s)	495, 513
BshVI	ATCGAT	1 cut(s)	559
BsiEI	CGRYCG	1 cut(s)	559
BsiHKAI	GWGCWC	2 cut(s)	320, 540
BsiHKCI	CYCGRG	2 cut(s)	313, 482
BsiSI	CCGG	4 cut(s)	416, 465, 496, 514
BsiWI	CGTACG	1 cut(s)	450
BslFI	GGGAC	2 cut(s)	270, 484
BslI	CCNNNNNNNGG	2 cut(s)	327, 484
BsmAI	GTCTC	2 cut(s)	46, 615
BsmFI	GGGAC	2 cut(s)	270, 484
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	4 cut(s)	331, 344, 419, 634
Bso31I	GGTCTC	1 cut(s)	615
BsoBI	CYCGRG	2 cut(s)	313, 482
Bsp1286I	GDGCHC	4 cut(s)	320, 472, 540, 552
Bsp143I	GATC	4 cut(s)	336, 369, 556, 560
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	6 cut(s)	4, 297, 399, 410, 413, 479
BspANI	GGCC	4 cut(s)	331, 344, 419, 634
BspDI	ATCGAT	1 cut(s)	559
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	5 cut(s)	44, 74, 469, 500, 672
BspPI	GGATC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	670
BspTNI	GGTCTC	1 cut(s)	615
BsrFI	RCCGGY	3 cut(s)	415, 495, 513
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	3 cut(s)	415, 495, 513
BssECI	CCNNGG	3 cut(s)	306, 483, 652
BssMI	GATC	4 cut(s)	336, 369, 556, 560
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	2 cut(s)	322, 653
Bst4CI	ACNGT	2 cut(s)	535, 675
Bst6I	CTCTTC	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	306
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	4 cut(s)	339, 372, 559, 563
BstMAI	GTCTC	2 cut(s)	46, 615
BstMBI	GATC	4 cut(s)	336, 369, 556, 560
BstMCI	CGRYCG	1 cut(s)	559
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 535, 622, 631
BstNI	CCWGG	2 cut(s)	322, 653
BstSCI	CCNGG	2 cut(s)	320, 651
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	517
BstV2I	GAAGAC	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	559
BsuRI	GGCC	4 cut(s)	331, 344, 419, 634
BsuTUI	ATCGAT	1 cut(s)	559
BtgI	CCRYGG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	417
CaiI	CAGNNNCTG	1 cut(s)	327
Cfr10I	RCCGGY	3 cut(s)	415, 495, 513
Cfr13I	GGNCC	3 cut(s)	72, 343, 498
ClaI	ATCGAT	1 cut(s)	559
CseI	GACGC	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	451, 603
CspAI	ACCGGT	2 cut(s)	495, 513
CviAII	CATG	1 cut(s)	307
CviQI	GTAC	2 cut(s)	451, 603
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	4 cut(s)	338, 371, 558, 562
DpnII	GATC	4 cut(s)	336, 369, 556, 560
EaeI	YGGCCR	1 cut(s)	632
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	399
Ecl136II	GAGCTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	3 cut(s)	320, 472, 552
Eco31I	GGTCTC	1 cut(s)	615
Eco47I	GGWCC	2 cut(s)	72, 498
Eco53kI	GAGCTC	1 cut(s)	318
Eco88I	CYCGRG	2 cut(s)	313, 482
EcoICRI	GAGCTC	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	320, 651
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	3 cut(s)	320, 472, 552
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	310
FaiI	YATR	3 cut(s)	144, 236, 308
FaqI	GGGAC	2 cut(s)	270, 484
FatI	CATG	1 cut(s)	306
FauI	CCCGC	1 cut(s)	486
Fnu4HI	GCNGC	2 cut(s)	413, 506
FriOI	GRGCYC	3 cut(s)	320, 472, 552
Fsp4HI	GCNGC	2 cut(s)	413, 506
GluI	GCNGC	2 cut(s)	413, 506
GsaI	CCCAGC	3 cut(s)	475, 505, 686
GsuI	CTGGAG	1 cut(s)	304
HaeIII	GGCC	4 cut(s)	331, 344, 419, 634
HapII	CCGG	4 cut(s)	416, 465, 496, 514
HgaI	GACGC	1 cut(s)	427
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	1 cut(s)	310
HinfI	GANTC	5 cut(s)	7, 283, 311, 425, 521
HpaII	CCGG	4 cut(s)	416, 465, 496, 514
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	3 cut(s)	336, 424, 692
Hpy188III	TCNNGA	1 cut(s)	367
Hpy8I	GTNNAC	1 cut(s)	590
Hpy99I	CGWCG	2 cut(s)	557, 640
HpyCH4III	ACNGT	2 cut(s)	535, 675
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	432
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 535, 622, 631
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	89
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	1 cut(s)	310
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
Kzo9I	GATC	4 cut(s)	336, 369, 556, 560
LmnI	GCTCC	4 cut(s)	323, 412, 467, 480
Lsp1109I	GCAGC	1 cut(s)	517
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	4 cut(s)	338, 371, 558, 562
MboI	GATC	4 cut(s)	336, 369, 556, 560
MboII	GAAGA	4 cut(s)	36, 126, 344, 433
MhlI	GDGCHC	4 cut(s)	320, 472, 540, 552
MluCI	AATT	2 cut(s)	96, 261
MluI	ACGCGT	1 cut(s)	198
MlyI	GAGTC	4 cut(s)	292, 305, 419, 530
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	8 cut(s)	22, 342, 356, 383, 430, 478, 566, 627
MroNI	GCCGGC	1 cut(s)	415
MseI	TTAA	1 cut(s)	102
MspI	CCGG	4 cut(s)	416, 465, 496, 514
MspR9I	CCNGG	2 cut(s)	322, 653
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	2 cut(s)	322, 653
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	4 cut(s)	116, 535, 622, 631
NaeI	GCCGGC	1 cut(s)	417
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	4 cut(s)	336, 369, 556, 560
NgoMIV	GCCGGC	1 cut(s)	415
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	5 cut(s)	44, 74, 469, 500, 672
PaeR7I	CTCGAG	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	2 cut(s)	552, 565
PctI	GAATGC	1 cut(s)	647
PdiI	GCCGGC	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	7
Pfl23II	CGTACG	1 cut(s)	450
PflMI	CCANNNNNTGG	1 cut(s)	327
PfoI	TCCNGGA	1 cut(s)	320
PinAI	ACCGGT	2 cut(s)	495, 513
PkrI	GCNGC	2 cut(s)	414, 507
Ple19I	CGATCG	1 cut(s)	559
PleI	GAGTC	4 cut(s)	291, 305, 419, 529
PpsI	GAGTC	4 cut(s)	291, 305, 419, 529
PpuMI	RGGWCCY	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	320
Psp1406I	AACGTT	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	320, 651
PspFI	CCCAGC	3 cut(s)	471, 501, 682
PspGI	CCWGG	2 cut(s)	320, 651
PspLI	CGTACG	1 cut(s)	450
PspN4I	GGNNCC	5 cut(s)	44, 74, 469, 500, 672
PspPI	GGNCC	3 cut(s)	72, 343, 498
PspPPI	RGGWCCY	1 cut(s)	72
PspXI	VCTCGAGB	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	327
PvuI	CGATCG	1 cut(s)	559
RsaI	GTAC	2 cut(s)	452, 604
RsaNI	GTAC	2 cut(s)	451, 603
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	413, 506
Sau3AI	GATC	4 cut(s)	336, 369, 556, 560
Sau96I	GGNCC	3 cut(s)	72, 343, 498
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	4 cut(s)	292, 305, 419, 530
ScrFI	CCNGG	2 cut(s)	322, 653
SduI	GDGCHC	4 cut(s)	320, 472, 540, 552
SetI	ASST	7 cut(s)	92, 151, 162, 320, 409, 477, 489
Sfr274I	CTCGAG	1 cut(s)	313
SinI	GGWCC	2 cut(s)	72, 498
SlaI	CTCGAG	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	2 cut(s)	96, 261
SsiI	CCGC	6 cut(s)	4, 297, 399, 410, 413, 479
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	320, 651
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	535, 675
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	5 cut(s)	281, 314, 519, 552, 559
TasI	AATT	2 cut(s)	96, 261
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	1 cut(s)	415
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	1 cut(s)	505
TspGWI	ACGGA	1 cut(s)	514
Van91I	CCANNNNNTGG	1 cut(s)	327
VpaK11BI	GGWCC	2 cut(s)	72, 498
XapI	RAATTY	1 cut(s)	261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	627
XhoI	CTCGAG	1 cut(s)	313
ZrmI	AGTACT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.