pycom13g16940

Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
12669564 .. 12672400
2837 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1800 bp
ATGAGAGATGAGAATTCCAAGAAAAGCAAGCTCTCATGGTCAAAGAAAATGGTCAGAAAGTGGTTCAACATCAAGAGCAAAAATGAAGACTTTCAGGCAGATGATGTTGACCACGGAGGAGGTGATCAGGTTGAATACAGGACCAGTTTCTCAGAGAGGGAACCATGCACAATTAAGAAAAGCAAGACAGAGAAGTTTAGCAAGAACACGGAGCGGGTTCGTCGGCGAAAAATGAATCTCGACCATCCTCGAATCATAGATGTAGAGAACCATAGCATTTTTGTTGCTACATGGAATGTGGCCGGAAGATCTCCCCCGAGTAATTTGAAACTGGATGATTGGCTTCATGCCTCACCTCCTGCGGATATTTATGTTCTTGGGTTTCAAGAGATAGTTCCTCTAAATGCTGGTAATATTCTGGGGGCAGAAGACAATGGCCCTGCCAAGAAATGGTTGGCTCTCATTCGGAAGACCTTAAACAATCTTCCCGGGACCAGTGGGGGTGGCGGGTGCTATACACCATCTCCCATCCCACAGCCAATTGTAGAACTACATGCAGATTTTGAGGGATCAGCTAGGCAGAAGAGCTCGTCTTTCTTCCAACGCCGATCATTTCAAGCAACCCACAGCTGGAGAACAGAGAATGACCCTTCAACCTCACAACCTCGACTTGATCGAAGGTTCAGTGTTTGTGATCGGGTGATCCTTGGTCACAGGCAAAGTGACTATGGTCCCAGGCCAAGTGAATATGGTCACAGGCCAAGTGACTATGATCCCAATTTCAAATGGGGTCACAGACCAAGTGACTATTCAAGGCCGAGTGACTACTCAAGGCCAAGTGACTACTCTAGGCCGAGTGACTATTCTAGGTGGGCATCGTCTGATGATGATAACGGACCAGGCGATTCACCAAGTACCGTGTTATTTTCACCAATGTCCTATGGCGGATCTGCGTCCAATGATGGATATAGAATGCCGGGGCGTTCGAGGTACAACTTAGTTGCAAGCAAGCAAATGGTTGGCATATTTCTCACAGTATGGGTCAGGAGTGAACTGAGGGATTCTGTTAAAGACATGAAAGTATCATGTGTTGGAAGAGGATTAATGGGTTATCTTGGAAATAAGGGATCCATATCAGTGAGCATGTCTTTGCACGATACAACCTTTTGCTTTGTTTGTACTCATTTAACCTCCGGACAGAAGGAGGGTGATGAACTAAGAAGAAATTCTGATGTCATGGAGATCCTTCGGAAGACAAGGTTTCCAAAAGTTAATGGCTCTGGTGCTCTGAAATCCCCAGAAACAATCCTGGAGCATGATCGAGTTATTTGGCTTGGGGATTTAAATTATCGAATTTCCCTCTCTTACCGCTCTGCTAAAGCGTTAGTTGAGATGCACAACTGGAGGGCCTTGTTAGAGAATGACCAGTTACGGATAGAGCAGAAACGTGGTCGTGTTTTTTCAGGCTGGAATGAGGGGAAGATTTATTTTCCACCAACTTACAAGTATTCAACAAATTCAGACAGATATGCAGGGGATGATATGCACCCAAAGGAGAAACGTCGAACACCTGCTTGGTGTGATCGAATATTGTGGTATGGAGAAGGTCTCCAACAATTATCGTATGTCCGTGGGGAATCTAGGTTCTCAGATCACAGACCAGTTTATGGCGTATTTTGGGCTGAGGTTGAGTCAAGCCAGAACCGGTTGAAGAAAAGCATGAGTTATTCTAGTTCCAGGATAGATGTTGAGGAGCTTCTTCCATATTCACATGGATATACCGAGCTAAACTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

600

Amino Acids

68.62

Weight (kDa)

9.25

Isoelectric Point (pI)

55.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 97 - 161 6.2e-07 Endonuclease/Exonuclease/phosphatase family 2
Exo_endo_phos2 PF22669 326 - 557 1.6e-64 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010814)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1579
Acc36I ACCTGC 1 cut(s) 1579
AccB7I CCANNNNNTGG 2 cut(s) 450, 1667
AccBSI CCGCTC 2 cut(s) 214, 1371
AccIII TCCGGA 1 cut(s) 1193
AciI CCGC 5 cut(s) 214, 362, 507, 945, 1369
AclWI GGATC 7 cut(s) 577, 697, 767, 955, 1122, 1135, 1237
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 4 cut(s) 13, 1225, 1353, 1516
AfaI GTAC 3 cut(s) 916, 992, 1180
AfiI CCNNNNNNNGG 3 cut(s) 450, 630, 1667
AgeI ACCGGT 1 cut(s) 1704
AjnI CCWGG 4 cut(s) 734, 898, 1308, 1736
AjuI GAANNNNNNNTTGG 4 cut(s) 793, 825, 1558, 1590
AloI GAACNNNNNNTCC 2 cut(s) 1628, 1660
AluBI AGCT 6 cut(s) 31, 575, 588, 630, 1756, 1786
AluI AGCT 6 cut(s) 31, 575, 588, 630, 1756, 1786
Alw21I GWGCWC 2 cut(s) 590, 1288
Alw26I GTCTC 1 cut(s) 1613
AlwI GGATC 7 cut(s) 577, 697, 767, 955, 1122, 1135, 1237
Ama87I CYCGRG 2 cut(s) 316, 488
Aor13HI TCCGGA 1 cut(s) 1193
AoxI GGCC 8 cut(s) 300, 436, 737, 758, 815, 833, 851, 1407
ApoI RAATTY 4 cut(s) 13, 1225, 1353, 1516
AseI ATTAAT 1 cut(s) 1103
AsiGI ACCGGT 1 cut(s) 1704
Asp700I GAANNNNTTC 2 cut(s) 90, 1225
AspS9I GGNCC 6 cut(s) 141, 437, 492, 731, 896, 1407
AsuC2I CCSGG 3 cut(s) 489, 490, 978
AsuHPI GGTGA 6 cut(s) 134, 345, 712, 900, 921, 1220
AvaI CYCGRG 2 cut(s) 316, 488
AvaII GGWCC 4 cut(s) 141, 492, 731, 896
BamHI GGATCC 1 cut(s) 1127
BanII GRGCYC 1 cut(s) 590
BbsI GAAGAC 4 cut(s) 93, 435, 476, 1259
Bbv12I GWGCWC 2 cut(s) 590, 1288
BbvCI CCTCAGC 1 cut(s) 1683
BccI CCATC 4 cut(s) 252, 529, 536, 956
BciT130I CCWGG 4 cut(s) 736, 900, 1310, 1738
BclI TGATCA 1 cut(s) 124
BcnI CCSGG 3 cut(s) 489, 490, 978
BcoDI GTCTC 1 cut(s) 1613
BfaI CTAG 5 cut(s) 576, 849, 867, 1641, 1731
BfuAI ACCTGC 1 cut(s) 1579
BglII AGATCT 1 cut(s) 308
Bme1390I CCNGG 7 cut(s) 489, 490, 736, 900, 978, 1310, 1738
Bme18I GGWCC 4 cut(s) 141, 492, 731, 896
BmeT110I CYCGRG 2 cut(s) 316, 488
BmgT120I GGNCC 6 cut(s) 141, 437, 492, 731, 896, 1407
BmiI GGNNCC 4 cut(s) 162, 493, 733, 1129
BmrFI CCNGG 7 cut(s) 489, 490, 736, 900, 978, 1310, 1738
BmsI GCATC 2 cut(s) 884, 1383
BoxI GACNNNNGTC 1 cut(s) 729
BpiI GAAGAC 4 cut(s) 93, 435, 476, 1259
BplI GAGNNNNNCTC 2 cut(s) 1593, 1625
BpmI CTGGAG 3 cut(s) 652, 1331, 1423
Bpu10I CCTNAGC 1 cut(s) 1683
BpuEI CTTGAG 1 cut(s) 814
BpuMI CCSGG 3 cut(s) 489, 490, 978
BsaBI GATNNNNATC 1 cut(s) 1132
BsaI GGTCTC 1 cut(s) 1613
BsaJI CCNNGG 6 cut(s) 112, 488, 706, 734, 977, 1630
BsaWI WCCGGW 2 cut(s) 1193, 1704
BsaXI ACNNNNNCTCC 2 cut(s) 508, 538
Bsc4I CCNNNNNNNGG 3 cut(s) 450, 630, 1667
Bse118I RCCGGY 1 cut(s) 1704
Bse1I ACTGG 6 cut(s) 144, 336, 495, 1406, 1426, 1661
Bse8I GATNNNNATC 1 cut(s) 1132
BseAI TCCGGA 1 cut(s) 1193
BseBI CCWGG 4 cut(s) 736, 900, 1310, 1738
BseDI CCNNGG 6 cut(s) 112, 488, 706, 734, 977, 1630
BseGI GGATG 4 cut(s) 244, 340, 528, 1543
BseJI GATNNNNATC 1 cut(s) 1132
BseLI CCNNNNNNNGG 3 cut(s) 450, 630, 1667
BseMII CTCAG 4 cut(s) 165, 1046, 1662, 1674
BseNI ACTGG 6 cut(s) 144, 336, 495, 1406, 1426, 1661
BseRI GAGGAG 2 cut(s) 132, 1766
BshFI GGCC 8 cut(s) 302, 438, 739, 760, 817, 835, 853, 1409
BshTI ACCGGT 1 cut(s) 1704
BsiHKAI GWGCWC 2 cut(s) 590, 1288
BsiHKCI CYCGRG 2 cut(s) 316, 488
BsiSI CCGG 5 cut(s) 303, 489, 977, 1194, 1705
BslFI GGGAC 2 cut(s) 505, 717
BslI CCNNNNNNNGG 3 cut(s) 450, 630, 1667
BsmAI GTCTC 1 cut(s) 1613
BsmFI GGGAC 2 cut(s) 505, 717
BsmI GAATGC 1 cut(s) 978
BsnI GGCC 8 cut(s) 302, 438, 739, 760, 817, 835, 853, 1409
Bso31I GGTCTC 1 cut(s) 1613
BsoBI CYCGRG 2 cut(s) 316, 488
Bsp1286I GDGCHC 2 cut(s) 590, 1288
Bsp13I TCCGGA 1 cut(s) 1193
BspACI CCGC 5 cut(s) 214, 362, 507, 945, 1369
BspANI GGCC 8 cut(s) 302, 438, 739, 760, 817, 835, 853, 1409
BspCNI CTCAG 4 cut(s) 164, 1047, 1661, 1675
BspEI TCCGGA 1 cut(s) 1193
BspLI GGNNCC 4 cut(s) 162, 493, 733, 1129
BspMI ACCTGC 1 cut(s) 1579
BspPI GGATC 7 cut(s) 577, 697, 767, 955, 1122, 1135, 1237
BspQI GCTCTTC 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 1613
BsrBI CCGCTC 2 cut(s) 214, 1371
BsrFI RCCGGY 1 cut(s) 1704
BsrI ACTGG 6 cut(s) 144, 336, 495, 1406, 1426, 1661
BssAI RCCGGY 1 cut(s) 1704
BssECI CCNNGG 6 cut(s) 112, 488, 706, 734, 977, 1630
BssT1I CCWWGG 1 cut(s) 706
Bst2UI CCWGG 4 cut(s) 736, 900, 1310, 1738
Bst4CI ACNGT 2 cut(s) 919, 1036
Bst6I CTCTTC 2 cut(s) 578, 1090
BstC8I GCNNGC 3 cut(s) 29, 1006, 1010
BstDEI CTNAG 6 cut(s) 151, 997, 1055, 1217, 1648, 1683
BstDSI CCRYGG 2 cut(s) 112, 1630
BstF5I GGATG 4 cut(s) 244, 340, 528, 1543
BstMAI GTCTC 1 cut(s) 1613
BstNI CCWGG 4 cut(s) 736, 900, 1310, 1738
BstNSI RCATGY 2 cut(s) 557, 1147
BstPAI GACNNNNGTC 1 cut(s) 729
BstSCI CCNGG 7 cut(s) 487, 488, 734, 898, 976, 1308, 1736
BstV2I GAAGAC 4 cut(s) 93, 435, 476, 1259
BstX2I RGATCY 4 cut(s) 308, 947, 1127, 1242
BstYI RGATCY 4 cut(s) 308, 947, 1127, 1242
BsuRI GGCC 8 cut(s) 302, 438, 739, 760, 817, 835, 853, 1409
BtgI CCRYGG 2 cut(s) 112, 1630
BtsCI GGATG 4 cut(s) 244, 340, 528, 1543
BtsIMutI CAGTG 3 cut(s) 502, 691, 1143
BveI ACCTGC 1 cut(s) 1579
Cac8I GCNNGC 3 cut(s) 29, 1006, 1010
Cfr10I RCCGGY 1 cut(s) 1704
Cfr13I GGNCC 6 cut(s) 141, 437, 492, 731, 896, 1407
Cfr9I CCCGGG 1 cut(s) 488
CseI GACGC 1 cut(s) 942
Csp6I GTAC 3 cut(s) 915, 991, 1179
CspAI ACCGGT 1 cut(s) 1704
CviQI GTAC 3 cut(s) 915, 991, 1179
DdeI CTNAG 6 cut(s) 151, 997, 1055, 1217, 1648, 1683
DraI TTTAAA 1 cut(s) 1344
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 2 cut(s) 578, 1090
EarI CTCTTC 2 cut(s) 578, 1090
EciI GGCGGA 1 cut(s) 960
Ecl136II GAGCTC 1 cut(s) 588
Eco130I CCWWGG 1 cut(s) 706
Eco24I GRGCYC 1 cut(s) 590
Eco31I GGTCTC 1 cut(s) 1613
Eco47I GGWCC 4 cut(s) 141, 492, 731, 896
Eco53kI GAGCTC 1 cut(s) 588
Eco88I CYCGRG 2 cut(s) 316, 488
EcoICRI GAGCTC 1 cut(s) 588
EcoO109I RGGNCCY 1 cut(s) 1407
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 4 cut(s) 734, 898, 1308, 1736
EcoT14I CCWWGG 1 cut(s) 706
EcoT38I GRGCYC 1 cut(s) 590
ErhI CCWWGG 1 cut(s) 706
FaqI GGGAC 2 cut(s) 505, 717
FauI CCCGC 2 cut(s) 207, 500
FbaI TGATCA 1 cut(s) 124
FokI GGATG 4 cut(s) 231, 347, 515, 1550
FriOI GRGCYC 1 cut(s) 590
FspBI CTAG 5 cut(s) 576, 849, 867, 1641, 1731
GsuI CTGGAG 3 cut(s) 652, 1331, 1423
HaeIII GGCC 8 cut(s) 302, 438, 739, 760, 817, 835, 853, 1409
HapII CCGG 5 cut(s) 303, 489, 977, 1194, 1705
HgaI GACGC 1 cut(s) 942
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 6 cut(s) 235, 252, 905, 1061, 1637, 1691
HpaII CCGG 5 cut(s) 303, 489, 977, 1194, 1705
HphI GGTGA 6 cut(s) 134, 345, 712, 900, 921, 1220
Hpy166II GTNNAC 2 cut(s) 109, 1052
Hpy188III TCNNGA 5 cut(s) 73, 239, 386, 1045, 1194
Hpy8I GTNNAC 2 cut(s) 109, 1052
Hpy99I CGWCG 2 cut(s) 225, 1566
HpyAV CCTTC 5 cut(s) 660, 672, 1195, 1256, 1598
HpyCH4III ACNGT 2 cut(s) 919, 1036
HpyCH4IV ACGT 2 cut(s) 1447, 1561
HpyCH4V TGCA 7 cut(s) 168, 557, 1004, 1153, 1396, 1532, 1546
HpyF3I CTNAG 6 cut(s) 151, 997, 1055, 1217, 1648, 1683
HpySE526I ACGT 2 cut(s) 1447, 1561
Kpn2I TCCGGA 1 cut(s) 1193
Ksp22I TGATCA 1 cut(s) 124
LguI GCTCTTC 1 cut(s) 578
LmnI GCTCC 3 cut(s) 211, 1312, 1753
LweI GCATC 2 cut(s) 884, 1383
MaeI CTAG 5 cut(s) 576, 849, 867, 1641, 1731
MaeII ACGT 2 cut(s) 1447, 1561
MbiI CCGCTC 2 cut(s) 214, 1371
MfeI CAATTG 1 cut(s) 540
MflI RGATCY 4 cut(s) 308, 947, 1127, 1242
MhlI GDGCHC 2 cut(s) 590, 1288
MlyI GAGTC 1 cut(s) 1700
MmeI TCCRAC 3 cut(s) 625, 1072, 1636
MroI TCCGGA 1 cut(s) 1193
MroXI GAANNNNTTC 2 cut(s) 90, 1225
MseI TTAA 7 cut(s) 174, 476, 1068, 1103, 1187, 1272, 1343
MslI CAYNNNNRTG 1 cut(s) 1136
MspA1I CMGCKG 1 cut(s) 630
MspI CCGG 5 cut(s) 303, 489, 977, 1194, 1705
MspR9I CCNGG 7 cut(s) 489, 490, 736, 900, 978, 1310, 1738
MunI CAATTG 1 cut(s) 540
Mva1269I GAATGC 1 cut(s) 978
MvaI CCWGG 4 cut(s) 736, 900, 1310, 1738
NciI CCSGG 3 cut(s) 489, 490, 978
NlaIV GGNNCC 4 cut(s) 162, 493, 733, 1129
NmeAIII GCCGAG 2 cut(s) 843, 879
NmuCI GTSAC 9 cut(s) 710, 722, 752, 764, 791, 803, 821, 839, 857
NspI RCATGY 2 cut(s) 557, 1147
PaqCI CACCTGC 1 cut(s) 1579
PciSI GCTCTTC 1 cut(s) 578
PcsI WCGNNNNNNNCGW 2 cut(s) 673, 900
PctI GAATGC 1 cut(s) 978
PdmI GAANNNNTTC 2 cut(s) 90, 1225
PfeI GAWTC 5 cut(s) 235, 252, 905, 1061, 1637
PflMI CCANNNNNTGG 2 cut(s) 450, 1667
PfoI TCCNGGA 2 cut(s) 1308, 1736
PinAI ACCGGT 1 cut(s) 1704
PleI GAGTC 1 cut(s) 1699
PpsI GAGTC 1 cut(s) 1699
PshAI GACNNNNGTC 1 cut(s) 729
PshBI ATTAAT 1 cut(s) 1103
Psp124BI GAGCTC 1 cut(s) 590
Psp6I CCWGG 4 cut(s) 734, 898, 1308, 1736
PspGI CCWGG 4 cut(s) 734, 898, 1308, 1736
PspN4I GGNNCC 4 cut(s) 162, 493, 733, 1129
PspPI GGNCC 6 cut(s) 141, 437, 492, 731, 896, 1407
PsuI RGATCY 4 cut(s) 308, 947, 1127, 1242
PvuII CAGCTG 1 cut(s) 630
RsaI GTAC 3 cut(s) 916, 992, 1180
RsaNI GTAC 3 cut(s) 915, 991, 1179
RseI CAYNNNNRTG 1 cut(s) 1136
SacI GAGCTC 1 cut(s) 590
SapI GCTCTTC 1 cut(s) 578
SaqAI TTAA 7 cut(s) 174, 476, 1068, 1103, 1187, 1272, 1343
Sau96I GGNCC 6 cut(s) 141, 437, 492, 731, 896, 1407
SchI GAGTC 1 cut(s) 1700
ScrFI CCNGG 7 cut(s) 489, 490, 736, 900, 978, 1310, 1738
SduI GDGCHC 2 cut(s) 590, 1288
SfaNI GCATC 2 cut(s) 884, 1383
SinI GGWCC 4 cut(s) 141, 492, 731, 896
SmaI CCCGGG 1 cut(s) 490
SmiI ATTTAAAT 1 cut(s) 1344
SmiMI CAYNNNNRTG 1 cut(s) 1136
SmlI CTYRAG 1 cut(s) 829
SmoI CTYRAG 1 cut(s) 829
SsiI CCGC 5 cut(s) 214, 362, 507, 945, 1369
SspI AATATT 2 cut(s) 415, 1590
SspMI CTAG 5 cut(s) 576, 849, 867, 1641, 1731
SstI GAGCTC 1 cut(s) 590
StyD4I CCNGG 7 cut(s) 487, 488, 734, 898, 976, 1308, 1736
StyI CCWWGG 1 cut(s) 706
SwaI ATTTAAAT 1 cut(s) 1344
TaaI ACNGT 2 cut(s) 919, 1036
TaiI ACGT 2 cut(s) 1450, 1564
TaqI TCGA 9 cut(s) 240, 250, 667, 676, 986, 1321, 1351, 1564, 1585
TatI WGTACW 1 cut(s) 1178
TfiI GAWTC 5 cut(s) 235, 252, 905, 1061, 1637
Tru1I TTAA 7 cut(s) 174, 476, 1068, 1103, 1187, 1272, 1343
Tru9I TTAA 7 cut(s) 174, 476, 1068, 1103, 1187, 1272, 1343
TscAI CASTG 3 cut(s) 502, 691, 1143
TseFI GTSAC 9 cut(s) 710, 722, 752, 764, 791, 803, 821, 839, 857
Tsp45I GTSAC 9 cut(s) 710, 722, 752, 764, 791, 803, 821, 839, 857
TspDTI ATGAA 5 cut(s) 99, 248, 335, 1091, 1227
TspGWI ACGGA 5 cut(s) 129, 224, 909, 1447, 1619
TspMI CCCGGG 1 cut(s) 488
TspRI CASTG 3 cut(s) 502, 691, 1143
Van91I CCANNNNNTGG 2 cut(s) 450, 1667
VpaK11BI GGWCC 4 cut(s) 141, 492, 731, 896
VspI ATTAAT 1 cut(s) 1103
XapI RAATTY 4 cut(s) 13, 1225, 1353, 1516
XceI RCATGY 2 cut(s) 557, 1147
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XmaI CCCGGG 1 cut(s) 488
XmnI GAANNNNTTC 2 cut(s) 90, 1225
XspI CTAG 5 cut(s) 576, 849, 867, 1641, 1731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.