Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0027873

Physical Location & Seq

Genomic Coordinates Reverse (-)

12921235 .. 12922273

Gene Structure 1039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGCAACGCAGACTACGAGTGCCCACGCCATGTCGAAATTCCTCCTTCCAAGCCATTTTTCAAGGCTCTGAAATCATCTCTGAAAGAAACTTTCTTTCCCGATGACCCTTTCAGGCAATTTAAGAACCAACCCACACCTAGAAAACTTGTTCTAGGATTGCAACACTTTGTGCCAATCCTCGAATGGGCTCCTCGCTATACTTTTGACTTCTTCAAATCTGATCTCATTTCTGGAATCACCATTGCCAGTCTTGCAGTTCCTCAAGGGATCAGCTATGCAAATTTAGCAAACTTGCCCCCAATTATTGGCCTATATTCGAGCTTTGTGCCTCCATTGGTGTATGCCATGCTTGGAAGTTCAAAAGATTTGGCAGTGGGTACTGTGGCGGTTGCATCCCTTCTCATATCTTCCATGTTGGGGAAGGTTGTTAGCCCTACTGAGAACCCTAAGCTCTACTTTCAGTTGGCTCTCACCTCTACCTTCTTTGCTGGAGCTTTCCAGGCTTCTCTTGGCTTCTTAAGAAGCAACCCCTCTGAAACGATGTTTGTATGTACGTATATGTGTATTTGCAGACTTGGGTTTGTCGTGGACTTTCTGTCTCATGCAACAATAGTGGGTTTCATGGGTGGAGCAGCCACTGTTGTATGTCTCCAGCAGCTTAAAGGGGTACTAGGGTTGATTCATTTCACTCATGAGACAGATGTTATATCTGTCATGAAATCTATCTTTTCTCAAGTGCACAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0009507 GO:0009536 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

251

Amino Acids

27.4

Weight (kDa)

8.78

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfate_transp	PF00916	72 - 175	6.1e-37	Sulfate permease family
Sulfate_transp	PF00916	184 - 249	2.1e-17	Sulfate permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027873)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00892
pyrus_communis	pycom13g17200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	308
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	2 cut(s)	39, 283
AdeI	CACNNNGTG	1 cut(s)	172
AfaI	GTAC	3 cut(s)	382, 556, 672
AfiI	CCNNNNNNNGG	3 cut(s)	187, 308, 420
AflII	CTTAAG	1 cut(s)	520
AgsI	TTSAA	3 cut(s)	64, 217, 363
AhdI	GACNNNNNGTC	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	501
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	5 cut(s)	276, 324, 454, 497, 661
AluI	AGCT	5 cut(s)	276, 324, 454, 497, 661
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	3 cut(s)	606, 656, 692
Alw44I	GTGCAC	1 cut(s)	740
AlwI	GGATC	1 cut(s)	278
AlwNI	CAGNNNCTG	1 cut(s)	641
AoxI	GGCC	1 cut(s)	310
ApaLI	GTGCAC	1 cut(s)	740
ApeKI	GCWGC	2 cut(s)	635, 658
ApoI	RAATTY	2 cut(s)	39, 283
AsuHPI	GGTGA	2 cut(s)	232, 466
BaeGI	GKGCMC	2 cut(s)	26, 744
BaeI	ACNNNNGTAYC	2 cut(s)	662, 695
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	2 cut(s)	647, 670
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	1 cut(s)	503
BcoDI	GTCTC	3 cut(s)	606, 656, 692
BfaI	CTAG	3 cut(s)	141, 155, 674
BfrI	CTTAAG	1 cut(s)	520
BisI	GCNGC	2 cut(s)	636, 659
BlsI	GCNGC	2 cut(s)	637, 660
Bme1390I	CCNGG	1 cut(s)	503
BmeRI	GACNNNNNGTC	1 cut(s)	598
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	1 cut(s)	404
BpmI	CTGGAG	2 cut(s)	513, 638
Bpu10I	CCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	249, 720
BsaAI	YACGTR	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 308, 420
Bse1I	ACTGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	503
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	3 cut(s)	187, 308, 420
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	183
BseSI	GKGCMC	2 cut(s)	26, 744
BseXI	GCAGC	2 cut(s)	647, 670
BshFI	GGCC	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	744
BslI	CCNNNNNNNGG	3 cut(s)	187, 308, 420
BsmAI	GTCTC	3 cut(s)	606, 656, 692
BsnI	GGCC	1 cut(s)	312
Bsp1286I	GDGCHC	3 cut(s)	26, 193, 744
Bsp143I	GATC	2 cut(s)	223, 270
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	433
BspHI	TCATGA	2 cut(s)	694, 717
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	249
BssMI	GATC	2 cut(s)	223, 270
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	2 cut(s)	385, 643
BstAFI	CTTAAG	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	441, 450
BstF5I	GGATG	1 cut(s)	395
BstKTI	GATC	2 cut(s)	226, 273
BstMAI	GTCTC	3 cut(s)	606, 656, 692
BstMBI	GATC	2 cut(s)	223, 270
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 287, 503
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	501
BstSLI	GKGCMC	2 cut(s)	26, 744
BstSNI	TACGTA	1 cut(s)	558
BstV1I	GCAGC	2 cut(s)	647, 670
BsuRI	GGCC	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	395
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	381, 639
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	2 cut(s)	694, 717
Csp6I	GTAC	3 cut(s)	381, 555, 671
CspCI	CAANNNNNGTGG	2 cut(s)	597, 632
CviAII	CATG	7 cut(s)	32, 349, 415, 605, 625, 695, 718
CviQI	GTAC	3 cut(s)	381, 555, 671
DdeI	CTNAG	2 cut(s)	441, 450
DpnI	GATC	2 cut(s)	225, 272
DpnII	GATC	2 cut(s)	223, 270
DraIII	CACNNNGTG	1 cut(s)	172
DriI	GACNNNNNGTC	1 cut(s)	598
Eam1105I	GACNNNNNGTC	1 cut(s)	598
Eco105I	TACGTA	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	7 cut(s)	35, 352, 418, 608, 628, 698, 721
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FatI	CATG	7 cut(s)	31, 348, 414, 604, 624, 694, 717
Fnu4HI	GCNGC	2 cut(s)	636, 659
FokI	GGATG	1 cut(s)	382
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	2 cut(s)	636, 659
FspBI	CTAG	3 cut(s)	141, 155, 674
GluI	GCNGC	2 cut(s)	636, 659
GsuI	CTGGAG	2 cut(s)	513, 638
HaeIII	GGCC	1 cut(s)	312
Hin1II	CATG	7 cut(s)	35, 352, 418, 608, 628, 698, 721
HinfI	GANTC	2 cut(s)	237, 682
HphI	GGTGA	2 cut(s)	232, 466
Hpy166II	GTNNAC	2 cut(s)	592, 742
Hpy188I	TCNGA	4 cut(s)	72, 84, 223, 538
Hpy188III	TCNNGA	4 cut(s)	101, 234, 695, 718
Hpy8I	GTNNAC	2 cut(s)	592, 742
HpyAV	CCTTC	4 cut(s)	57, 410, 418, 493
HpyCH4III	ACNGT	2 cut(s)	385, 643
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	7 cut(s)	163, 257, 281, 395, 573, 608, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 287, 503
HpyF3I	CTNAG	2 cut(s)	441, 450
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	7 cut(s)	35, 352, 418, 608, 628, 698, 721
Kzo9I	GATC	2 cut(s)	223, 270
LmnI	GCTCC	3 cut(s)	196, 494, 632
LpnPI	CCDG	7 cut(s)	100, 219, 262, 477, 488, 515, 668
Lsp1109I	GCAGC	2 cut(s)	647, 670
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	3 cut(s)	141, 155, 674
MaeII	ACGT	1 cut(s)	557
MalI	GATC	2 cut(s)	225, 272
MboI	GATC	2 cut(s)	223, 270
MboII	GAAGA	2 cut(s)	205, 402
MhlI	GDGCHC	3 cut(s)	26, 193, 744
MluCI	AATT	4 cut(s)	39, 119, 283, 303
MnlI	CCTC	7 cut(s)	54, 191, 204, 273, 342, 487, 544
MseI	TTAA	3 cut(s)	123, 521, 663
MspCI	CTTAAG	1 cut(s)	520
MspR9I	CCNGG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	3 cut(s)	254, 287, 503
NdeII	GATC	2 cut(s)	223, 270
NlaIII	CATG	7 cut(s)	35, 352, 418, 608, 628, 698, 721
NlaIV	GGNNCC	1 cut(s)	192
PagI	TCATGA	2 cut(s)	694, 717
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	237, 682
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	637, 660
Ppu21I	YACGTR	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	192
PstNI	CAGNNNCTG	1 cut(s)	641
RsaI	GTAC	3 cut(s)	382, 556, 672
RsaNI	GTAC	3 cut(s)	381, 555, 671
SaqAI	TTAA	3 cut(s)	123, 521, 663
SatI	GCNGC	2 cut(s)	636, 659
Sau3AI	GATC	2 cut(s)	223, 270
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	3 cut(s)	26, 193, 744
SfaNI	GCATC	1 cut(s)	404
SmlI	CTYRAG	3 cut(s)	264, 520, 735
SmoI	CTYRAG	3 cut(s)	264, 520, 735
SnaBI	TACGTA	1 cut(s)	558
Sse9I	AATT	4 cut(s)	39, 119, 283, 303
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	3 cut(s)	141, 155, 674
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	385, 643
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	3 cut(s)	36, 183, 320
TasI	AATT	4 cut(s)	39, 119, 283, 303
TfiI	GAWTC	2 cut(s)	237, 682
Tru1I	TTAA	3 cut(s)	123, 521, 663
Tru9I	TTAA	3 cut(s)	123, 521, 663
TscAI	CASTG	2 cut(s)	381, 646
TseI	GCWGC	2 cut(s)	635, 658
TspDTI	ATGAA	3 cut(s)	613, 674, 734
TspRI	CASTG	2 cut(s)	381, 646
Van91I	CCANNNNNTGG	1 cut(s)	308
Vha464I	CTTAAG	1 cut(s)	520
VneI	GTGCAC	1 cut(s)	740
XapI	RAATTY	2 cut(s)	39, 283
XcmI	CCANNNNNNNNNTGG	2 cut(s)	183, 509
XspI	CTAG	3 cut(s)	141, 155, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.