Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0029444

Physical Location & Seq

Genomic Coordinates Forward (+)

13535458 .. 13535769

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTATTTCAACGCTCCGGGGGAGTACTTGTACATTGGCGCCGGTCTGTTTACAATTGTGTTTTGCATCATTGAGATGGATAAGCCAGACAAACCCCACAACTTTGAACCCCAGATATACAACATGGAGAGGGGAGCTCGTGACAAGCTGATAGCGGACTACAACACCATGGATATATGGGATTTCAATGAGAAATATATGAAGATATGTGGGATTTCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

8.72

Weight (kDa)

4.68

Isoelectric Point (pI)

15.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0029444)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g17700
rosa_samantha	Rh4BG021300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	26, 32
AgsI	TTSAA	3 cut(s)	10, 107, 187
AluBI	AGCT	2 cut(s)	137, 148
AluI	AGCT	2 cut(s)	137, 148
Alw21I	GWGCWC	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	139
BccI	CCATC	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	42
BmcAI	AGTACT	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	75
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BpuMI	CCSGG	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	17, 168
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bse118I	RCCGGY	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	17, 168
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	17, 42
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	30
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	17, 168
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	16
BtgI	CCRYGG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	25, 31
CviAII	CATG	2 cut(s)	124, 169
CviJI	RGCY	3 cut(s)	85, 137, 148
CviKI_1	RGCY	3 cut(s)	85, 137, 148
CviQI	GTAC	2 cut(s)	25, 31
DinI	GGCGCC	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	139
Eco53kI	GAGCTC	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	139
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	2 cut(s)	127, 172
FaiI	YATR	8 cut(s)	118, 125, 170, 176, 178, 198, 200, 208
FatI	CATG	2 cut(s)	123, 168
FriOI	GRGCYC	1 cut(s)	139
GlaI	GCGC	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	42
HapII	CCGG	2 cut(s)	17, 42
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	127, 172
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HpaII	CCGG	2 cut(s)	17, 42
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	51
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	127, 172
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	19, 134
LpnPI	CCDG	4 cut(s)	30, 55, 99, 125
LweI	GCATC	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	140
MboII	GAAGA	1 cut(s)	214
MfeI	CAATTG	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	1 cut(s)	54
Mly113I	GGCGCC	1 cut(s)	39
MnlI	CCTC	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	74
MspI	CCGG	2 cut(s)	17, 42
MspR9I	CCNGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	54
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	168
NlaIII	CATG	2 cut(s)	127, 172
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	140
PluTI	GGCGCC	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	40
RsaI	GTAC	2 cut(s)	26, 32
RsaNI	GTAC	2 cut(s)	25, 31
RseI	CAYNNNNRTG	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	139
ScaI	AGTACT	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	2 cut(s)	139, 150
SfaNI	GCATC	1 cut(s)	75
SfoI	GGCGCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	1 cut(s)	155
SspDI	GGCGCC	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	222
TasI	AATT	1 cut(s)	54
TatI	WGTACW	2 cut(s)	24, 30
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	225
ZrmI	AGTACT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.