pycom13g21960

coiled-coil domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
19043941 .. 19044893
953 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGGATTTGTCAAAGGTCGGCGAGAAGATTCTGAGCTCCTTTAGGTGTGCCAGATTGCTCGGCCTTCTTCCTTCTACTTCTGATTGCCCGAGGTGTTTGAAATTTCAGTTTTTGCACGTGATGACATCGACAGTGTTGAAATCATGGACATGGGGTTGTGGTTTGTCAACTATTTCCAGGCCAATAGTTTATAACTATTGCCCATCTGTTCTGTTGAGAATCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.49

Weight (kDa)

9.45

Isoelectric Point (pI)

21.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029200)

Species Orthologous Gene IDs
pyrus_communis pycom01g18470 pycom13g21960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 192
AcsI RAATTY 1 cut(s) 101
AcvI CACGTG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 100, 139
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 88
AoxI GGCC 2 cut(s) 61, 179
ApoI RAATTY 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 88
BanII GRGCYC 1 cut(s) 38
BbrPI CACGTG 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 38
BccI CCATC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 178
BsaAI YACGTR 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 23
BshFI GGCC 2 cut(s) 63, 181
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 88
BsnI GGCC 2 cut(s) 63, 181
BsoBI CYCGRG 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 38
BspANI GGCC 2 cut(s) 63, 181
BspCNI CTCAG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 133
BstBAI YACGTR 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 32
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 176
BsuRI GGCC 2 cut(s) 63, 181
BtsIMutI CAGTG 1 cut(s) 138
CviAII CATG 2 cut(s) 144, 150
CviJI RGCY 3 cut(s) 36, 63, 181
CviKI_1 RGCY 3 cut(s) 36, 63, 181
DdeI CTNAG 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 36
Eco72I CACGTG 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 38
FaeI CATG 2 cut(s) 147, 153
FaiI YATR 3 cut(s) 145, 151, 192
FatI CATG 2 cut(s) 143, 149
FriOI GRGCYC 1 cut(s) 38
HaeIII GGCC 2 cut(s) 63, 181
Hin1II CATG 2 cut(s) 147, 153
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 2 cut(s) 28, 219
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 33, 82
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 74, 81
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 2 cut(s) 147, 153
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 3 cut(s) 64, 163, 190
MaeII ACGT 1 cut(s) 117
MboII GAAGA 3 cut(s) 37, 59, 214
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 1 cut(s) 101
MnlI CCTC 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
NlaIII CATG 2 cut(s) 147, 153
NmeAIII GCCGAG 1 cut(s) 39
PfeI GAWTC 2 cut(s) 28, 219
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
Ppu21I YACGTR 1 cut(s) 118
PsiI TTATAA 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 176
PspCI CACGTG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 148
SacI GAGCTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 38
SetI ASST 5 cut(s) 18, 38, 47, 95, 120
SmiMI CAYNNNNRTG 1 cut(s) 148
Sse9I AATT 1 cut(s) 101
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 128
TasI AATT 1 cut(s) 101
TfiI GAWTC 2 cut(s) 28, 219
TscAI CASTG 1 cut(s) 138
TspRI CASTG 1 cut(s) 138
XapI RAATTY 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.