pycom13g27480

3beta-hydroxysteroid-dehydrogenase decarboxylase isoform

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
23719054 .. 23720913
1860 bp
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UTR
Exon/CDS
Intron
pycom13g27480.3

Sequence Viewer

Length: 357 bp
ATGCCTGGGATATCAAAGGTAAAACCATTACTGAAAGTTCCTGCTAAGATGGCTTGGTACATCATATTGTTCATCAAATGGATAGCCCAAAAGTATGGAATGATAAAATACAATGATTCTATGTCAGCGCAATACATTCGATTATCTTCACGCACTAGAACGTTCGACTGCACTGCGGCTCAAAAGCAGATTGGGTATTCACCAGTTATCTCACTGGAAGAAGGTGTCACATTAACCATTGACGAGTCATTCTCTAATTTAGCCAGAAACTCATCTTTCCCAACTTTCAGAAACTTTAATGAGGAATCAAAAGTGGAGAAGCTGCTAGGCAGTGGAGAAGGCTGTTTTCCGTTGTAG
Functional Annotation

Protein Analysis

119

Amino Acids

13.34

Weight (kDa)

9.33

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028275)

Species Orthologous Gene IDs
malus_domestica MD13G1270500.v1.1
pyrus_communis pycom13g27480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AclI AACGTT 1 cut(s) 161
AfaI GTAC 1 cut(s) 59
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
ApeKI GCWGC 1 cut(s) 322
AspLEI GCGC 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 192
BbvI GCAGC 1 cut(s) 309
BccI CCATC 1 cut(s) 43
BcgI CGANNNNNNTGC 4 cut(s) 119, 153, 155, 189
BciT130I CCWGG 1 cut(s) 6
BfaI CTAG 2 cut(s) 156, 326
BisI GCNGC 2 cut(s) 177, 323
BlsI GCNGC 2 cut(s) 178, 324
Bme1390I CCNGG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 6
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BsaJI CCNNGG 1 cut(s) 5
Bse1I ACTGG 2 cut(s) 203, 219
BseBI CCWGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 5
BseNI ACTGG 2 cut(s) 203, 219
BseXI GCAGC 1 cut(s) 309
BsgI GTGCAG 1 cut(s) 154
BspACI CCGC 1 cut(s) 176
BsrI ACTGG 2 cut(s) 203, 219
BssECI CCNNGG 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 6
BstSCI CCNGG 1 cut(s) 4
BstV1I GCAGC 1 cut(s) 309
BstXI CCANNNNNNTGG 1 cut(s) 95
BtsI GCAGTG 2 cut(s) 171, 337
BtsIMutI CAGTG 3 cut(s) 171, 212, 337
CfoI GCGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 58
CviJI RGCY 6 cut(s) 53, 86, 179, 263, 322, 342
CviKI_1 RGCY 6 cut(s) 53, 86, 179, 263, 322, 342
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 45
Eco32I GATATC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 4
EcoRV GATATC 1 cut(s) 12
FaiI YATR 3 cut(s) 65, 96, 122
Fnu4HI GCNGC 2 cut(s) 177, 323
Fsp4HI GCNGC 2 cut(s) 177, 323
FspBI CTAG 2 cut(s) 156, 326
GlaI GCGC 1 cut(s) 129
GluI GCNGC 2 cut(s) 177, 323
HhaI GCGC 1 cut(s) 130
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HinfI GANTC 3 cut(s) 116, 245, 305
HphI GGTGA 1 cut(s) 192
Hpy188I TCNGA 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 215, 332
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 161
HspAI GCGC 1 cut(s) 128
LpnPI CCDG 5 cut(s) 18, 54, 200, 216, 277
Lsp1109I GCAGC 1 cut(s) 309
MaeI CTAG 2 cut(s) 156, 326
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 226
MboII GAAGA 2 cut(s) 138, 230
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 1 cut(s) 295
MseI TTAA 2 cut(s) 233, 297
MspR9I CCNGG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 116, 305
PkrI GCNGC 2 cut(s) 178, 324
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
Psp1406I AACGTT 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 233, 297
SatI GCNGC 2 cut(s) 177, 323
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 6
SetI ASST 4 cut(s) 21, 164, 226, 324
Sse9I AATT 1 cut(s) 256
SsiI CCGC 1 cut(s) 176
SspMI CTAG 2 cut(s) 156, 326
StyD4I CCNGG 1 cut(s) 4
TaiI ACGT 1 cut(s) 164
TaqI TCGA 2 cut(s) 139, 165
TasI AATT 1 cut(s) 256
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 2 cut(s) 116, 305
Tru1I TTAA 2 cut(s) 233, 297
Tru9I TTAA 2 cut(s) 233, 297
TscAI CASTG 3 cut(s) 178, 219, 337
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 3 cut(s) 178, 219, 337
XspI CTAG 2 cut(s) 156, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.