Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0024691

Physical Location & Seq

Genomic Coordinates Reverse (-)

25963461 .. 25965291

Gene Structure 1831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGATCATCCCCTCTACCATAAATCCAACACTTGTCAGATCCCTTGCAGTGGTTACTAGCTTCATTCAATGTCCCCTTGGGGGCAGTGATACCATAGGAATTGGCATTGGAACAAAGCAAAGTATCGAATTATTCAGGTCCTTACTAGATAAGGTAGACACAGAGAAGCTGGAAGGTTGGGAGCTTGAACAACTTTGCAGTCAGCTCCAGGAACTAATCTCTTCCCTACAGCCCCTGAAAGACATCAGTGATAGCATAGGGAAAATATTTCCAGGAAATTCACGCCTAATTGTTCGTTCAAGTGCTAACATTGAGGACTTGGCCGGAATGTCAGCTGCTATATTATACGACTCAACTCCCAATGTTAGTGTTTCAAATCCAATAGTTTTTGCAAATGCTATTAGCAAAGTATGGGCCTCACTTTGCAATTGGAGGGTAGTTTTGAGCCGTCGAGCTCCTAAAATGCTTTCACCAGACTTATCATTTGTGCTTCACATAGTCAGTCCAATAGACCAAGATCATAATTTTGTTGAGGCTGAAATTACTTCTGGCCTTGGTGAAACTTTGGCTTCAAGCACTAGGGGCACACCTTGGTGTTTATCATCTGGGAAATTTGATGGGAATATACGAACTCTGGCATTTGCGAATTTCAGTGAGGAGCTAGTCGGTGCATCCTTTGCTGATGGGGAGGTTATCCATTTGAGTGTAGATTGCAGCCAAGAAACCATTAACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0019200 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046835 GO:0051752 GO:0071704 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 PPDK_N

Protein Analysis

246

Amino Acids

26.41

Weight (kDa)

4.73

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPDK_N	PF01326	47 - 170	3.4e-08	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024691)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g29350
rosa_multiflora	Rmu_sc0000543.1_g000029 Rmu_sc0000543.1_g000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	3 cut(s)	277, 611, 646
AfiI	CCNNNNNNNGG	2 cut(s)	49, 80
AgsI	TTSAA	5 cut(s)	68, 188, 300, 375, 573
AjnI	CCWGG	2 cut(s)	207, 271
AleI	CACNNNNGTG	1 cut(s)	592
AluBI	AGCT	7 cut(s)	60, 169, 184, 205, 335, 455, 661
AluI	AGCT	7 cut(s)	60, 169, 184, 205, 335, 455, 661
Alw21I	GWGCWC	1 cut(s)	457
AlwI	GGATC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	235
AoxI	GGCC	3 cut(s)	321, 414, 550
ApeKI	GCWGC	2 cut(s)	335, 714
ApoI	RAATTY	3 cut(s)	277, 611, 646
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
AspS9I	GGNCC	2 cut(s)	138, 414
AsuHPI	GGTGA	2 cut(s)	462, 569
AvaII	GGWCC	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	322, 726
BccI	CCATC	2 cut(s)	611, 677
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	2 cut(s)	209, 273
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	4 cut(s)	57, 146, 579, 662
BfmI	CTRYAG	1 cut(s)	227
BisI	GCNGC	2 cut(s)	336, 715
BlsI	GCNGC	2 cut(s)	337, 716
Bme1390I	CCNGG	2 cut(s)	209, 273
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	138, 414
BmrFI	CCNGG	2 cut(s)	209, 273
BmsI	GCATC	1 cut(s)	680
BpmI	CTGGAG	1 cut(s)	191
BsaJI	CCNNGG	3 cut(s)	76, 553, 590
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 80
BseBI	CCWGG	2 cut(s)	209, 273
BseDI	CCNNGG	3 cut(s)	76, 553, 590
BseGI	GGATG	2 cut(s)	6, 671
BseLI	CCNNNNNNNGG	2 cut(s)	49, 80
BseRI	GAGGAG	1 cut(s)	671
BseSI	GKGCMC	1 cut(s)	587
BseXI	GCAGC	2 cut(s)	322, 726
BshFI	GGCC	3 cut(s)	323, 416, 552
BsiHKAI	GWGCWC	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	2 cut(s)	49, 80
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	3 cut(s)	323, 416, 552
Bsp1286I	GDGCHC	2 cut(s)	457, 587
Bsp143I	GATC	3 cut(s)	3, 38, 517
BspANI	GGCC	3 cut(s)	323, 416, 552
BspPI	GGATC	1 cut(s)	33
BssECI	CCNNGG	3 cut(s)	76, 553, 590
BssMI	GATC	3 cut(s)	3, 38, 517
BssT1I	CCWWGG	3 cut(s)	76, 553, 590
Bst2UI	CCWGG	2 cut(s)	209, 273
Bst4CI	ACNGT	1 cut(s)	734
Bst6I	CTCTTC	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstF5I	GGATG	2 cut(s)	6, 671
BstKTI	GATC	3 cut(s)	6, 41, 520
BstMBI	GATC	3 cut(s)	3, 38, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	582, 677
BstNI	CCWGG	2 cut(s)	209, 273
BstSCI	CCNGG	2 cut(s)	207, 271
BstSFI	CTRYAG	1 cut(s)	227
BstSLI	GKGCMC	1 cut(s)	587
BstV1I	GCAGC	2 cut(s)	322, 726
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	3 cut(s)	323, 416, 552
BtsCI	GGATG	2 cut(s)	6, 671
BtsI	GCAGTG	2 cut(s)	54, 91
BtsIMutI	CAGTG	4 cut(s)	54, 91, 253, 658
CaiI	CAGNNNCTG	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	138, 414
DpnI	GATC	3 cut(s)	5, 40, 519
DpnII	GATC	3 cut(s)	3, 38, 517
EaeI	YGGCCR	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Ecl136II	GAGCTC	1 cut(s)	455
Eco130I	CCWWGG	3 cut(s)	76, 553, 590
Eco24I	GRGCYC	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	207, 271
EcoT14I	CCWWGG	3 cut(s)	76, 553, 590
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	3 cut(s)	76, 553, 590
FaiI	YATR	9 cut(s)	20, 95, 257, 341, 346, 412, 497, 522, 626
FaqI	GGGAC	1 cut(s)	57
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	336, 715
FokI	GGATG	1 cut(s)	658
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	2 cut(s)	336, 715
FspBI	CTAG	4 cut(s)	57, 146, 579, 662
GluI	GCNGC	2 cut(s)	336, 715
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	3 cut(s)	323, 416, 552
HapII	CCGG	1 cut(s)	324
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	2 cut(s)	462, 569
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	453
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	734
HpyCH4V	TGCA	6 cut(s)	47, 198, 392, 426, 671, 714
HpyF10VI	GCNNNNNNNGC	2 cut(s)	582, 677
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 38, 517
LmnI	GCTCC	4 cut(s)	181, 210, 460, 658
Lsp1109I	GCAGC	2 cut(s)	322, 726
LweI	GCATC	1 cut(s)	680
MaeI	CTAG	4 cut(s)	57, 146, 579, 662
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	3 cut(s)	5, 40, 519
MboI	GATC	3 cut(s)	3, 38, 517
MboII	GAAGA	1 cut(s)	213
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	2 cut(s)	457, 587
MluCI	AATT	9 cut(s)	99, 128, 277, 288, 427, 523, 540, 611, 646
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	7 cut(s)	22, 307, 426, 427, 526, 649, 682
MseI	TTAA	1 cut(s)	729
MslI	CAYNNNNRTG	2 cut(s)	592, 702
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	2 cut(s)	209, 273
MunI	CAATTG	1 cut(s)	427
MvaI	CCWGG	2 cut(s)	209, 273
MwoI	GCNNNNNNNGC	2 cut(s)	582, 677
NdeII	GATC	3 cut(s)	3, 38, 517
OliI	CACNNNNGTG	1 cut(s)	592
PfoI	TCCNGGA	2 cut(s)	207, 271
PkrI	GCNGC	2 cut(s)	337, 716
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
PpuMI	RGGWCCY	1 cut(s)	138
Psp124BI	GAGCTC	1 cut(s)	457
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	207, 271
PspGI	CCWGG	2 cut(s)	207, 271
PspPI	GGNCC	2 cut(s)	138, 414
PspPPI	RGGWCCY	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	335
RseI	CAYNNNNRTG	2 cut(s)	592, 702
SacI	GAGCTC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	729
SatI	GCNGC	2 cut(s)	336, 715
Sau3AI	GATC	3 cut(s)	3, 38, 517
Sau96I	GGNCC	2 cut(s)	138, 414
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	209, 273
SduI	GDGCHC	2 cut(s)	457, 587
SfaNI	GCATC	1 cut(s)	680
SfcI	CTRYAG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	2 cut(s)	592, 702
Sse9I	AATT	9 cut(s)	99, 128, 277, 288, 427, 523, 540, 611, 646
SspI	AATATT	1 cut(s)	267
SspMI	CTAG	4 cut(s)	57, 146, 579, 662
SstI	GAGCTC	1 cut(s)	457
StyD4I	CCNGG	2 cut(s)	207, 271
StyI	CCWWGG	3 cut(s)	76, 553, 590
TaaI	ACNGT	1 cut(s)	734
TaqI	TCGA	2 cut(s)	126, 451
TasI	AATT	9 cut(s)	99, 128, 277, 288, 427, 523, 540, 611, 646
Tru1I	TTAA	1 cut(s)	729
Tru9I	TTAA	1 cut(s)	729
TscAI	CASTG	4 cut(s)	54, 91, 253, 658
TseI	GCWGC	2 cut(s)	335, 714
TspDTI	ATGAA	1 cut(s)	52
TspRI	CASTG	4 cut(s)	54, 91, 253, 658
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	3 cut(s)	277, 611, 646
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	4 cut(s)	57, 146, 579, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.