Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000543.1

Orthogroup ID

OG0024691

Physical Location & Seq

Genomic Coordinates Forward (+)

106762 .. 107106

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000543.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggtttttccatttgcagtttttagtgaccaaggggtaccagcttcctttaatgtccctgctggagcagtgataccatttgggtctatggaactggcattagagaaaagaaaatccattgaatcattcacatcctttctaaataagatagaaacattgaagccggaaagtggagaacttgaccaagtatgtggtcagcttcaggaactgatctcttctctacagccctccaaagatatcattgatagaatagctaaaatatttccaggcaatgcacggctaattgttcgtttaagtgctaatgttgaagacttagctggaatgtcggctgctggactacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0019200 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046835 GO:0051752 GO:0071704 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 PPDK_N

Protein Analysis

114

Amino Acids

12.25

Weight (kDa)

4.85

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024691)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g29350
rosa_multiflora	Rmu_sc0000543.1_g000029 Rmu_sc0000543.1_g000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	122, 160, 308
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	4 cut(s)	44, 199, 254, 317
AluI	AGCT	4 cut(s)	44, 199, 254, 317
AlwNI	CAGNNNCTG	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	329
Asp718I	GGTACC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	316
BceAI	ACGGC	1 cut(s)	293
BciT130I	CCWGG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	277
BseNI	ACTGG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	316
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	267
Bst6I	CTCTTC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	313
BstF5I	GGATG	1 cut(s)	131
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	315
BstXI	CCANNNNNNTGG	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	38
CviJI	RGCY	8 cut(s)	44, 163, 199, 226, 254, 280, 317, 329
CviKI_1	RGCY	8 cut(s)	44, 163, 199, 226, 254, 280, 317, 329
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	1 cut(s)	313
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	265
EcoRV	GATATC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaiI	YATR	2 cut(s)	89, 190
FaqI	GGGAC	1 cut(s)	41
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	330
GluI	GCNGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	84
HapII	CCGG	1 cut(s)	164
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	164
Hpy188III	TCNNGA	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	17, 275
HpyF3I	CTNAG	1 cut(s)	313
KpnI	GGTACC	1 cut(s)	41
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	2 cut(s)	207, 320
MluCI	AATT	1 cut(s)	282
MnlI	CCTC	1 cut(s)	238
MseI	TTAA	2 cut(s)	51, 293
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
NdeII	GATC	1 cut(s)	210
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	39
PstNI	CAGNNNCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	51, 293
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	4 cut(s)	46, 201, 256, 319
SfcI	CTRYAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	282
SspI	AATATT	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	31
TasI	AATT	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	51, 293
Tru9I	TTAA	2 cut(s)	51, 293
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	26
TspRI	CASTG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.