pycom14g03590

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0029453
Physical Location & Seq
Forward (+)
3030638 .. 3031438
801 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGTTGTATGCGATTAGTAATCACTATGGTGGCTTGGGCGGTGGTCACTATACTGCATTTGCCCAACTCGGTGATGGTTCGTGGTATGAGTTTGATGATGACAGGGTTTGTCCTGTTATGGAAGAGACGATCAAGACATCAGCTGCATATGTTCTTTTCTACAGAAGAATACCAAATGTAATATCGGAGAGGGATATTCATAGAGAAATGGAGCAGATGATTCATGTTGTACAGCTTTTAATTCACCTTGCTAGCAGCTGGTTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 map04137
Pfam Domains
Protein Families
UCH

Protein Analysis

90

Amino Acids

10.25

Weight (kDa)

5.34

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 2 - 54 1.4e-14 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0029453)

Species Orthologous Gene IDs
pyrus_communis pycom14g03590
rosa_samantha Rh7DG310100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 39
AfaI GTAC 1 cut(s) 231
AleI CACNNNNGTG 1 cut(s) 27
AluBI AGCT 3 cut(s) 143, 235, 258
AluI AGCT 3 cut(s) 143, 235, 258
Alw26I GTCTC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 143, 255
AsuHPI GGTGA 2 cut(s) 83, 236
AsuNHI GCTAGC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 160
BisI GCNGC 2 cut(s) 144, 256
BlsI GCNGC 2 cut(s) 145, 257
BmtI GCTAGC 1 cut(s) 255
BseXI GCAGC 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
Bsp1407I TGTACA 1 cut(s) 229
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 1 cut(s) 39
BspOI GCTAGC 1 cut(s) 255
BsrGI TGTACA 1 cut(s) 229
BssMI GATC 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 117
BstAUI TGTACA 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 253
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 230
CviAII CATG 1 cut(s) 224
CviJI RGCY 4 cut(s) 33, 143, 235, 258
CviKI_1 RGCY 4 cut(s) 33, 143, 235, 258
CviQI GTAC 1 cut(s) 230
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 1 cut(s) 227
FaiI YATR 9 cut(s) 9, 27, 51, 87, 119, 148, 150, 201, 225
FatI CATG 1 cut(s) 223
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 144, 256
Fsp4HI GCNGC 2 cut(s) 144, 256
FspBI CTAG 1 cut(s) 252
GluI GCNGC 2 cut(s) 144, 256
Hin1II CATG 1 cut(s) 227
HinfI GANTC 1 cut(s) 220
HphI GGTGA 2 cut(s) 83, 236
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 56, 146
Hsp92II CATG 1 cut(s) 227
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 3 cut(s) 88, 126, 244
Lsp1109I GCAGC 1 cut(s) 130
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 2 cut(s) 134, 177
MluCI AATT 2 cut(s) 240, 264
MnlI CCTC 1 cut(s) 183
MseI TTAA 2 cut(s) 239, 263
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 2 cut(s) 143, 258
NdeI CATATG 1 cut(s) 148
NdeII GATC 1 cut(s) 129
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 44
OliI CACNNNNGTG 1 cut(s) 27
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 2 cut(s) 145, 257
PvuII CAGCTG 2 cut(s) 143, 258
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 2 cut(s) 239, 263
SatI GCNGC 2 cut(s) 144, 256
Sau3AI GATC 1 cut(s) 129
SetI ASST 4 cut(s) 145, 237, 249, 260
SfcI CTRYAG 1 cut(s) 160
SgeI CNNG 9 cut(s) 46, 80, 93, 115, 125, 145, 236, 260, 264
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 2 cut(s) 240, 264
SsiI CCGC 1 cut(s) 39
SspMI CTAG 1 cut(s) 252
TasI AATT 2 cut(s) 240, 264
TatI WGTACW 1 cut(s) 229
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 2 cut(s) 239, 263
Tru9I TTAA 2 cut(s) 239, 263
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 2 cut(s) 143, 255
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 188, 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.