Rh7DG310100

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0029453
Physical Location & Seq
Reverse (-)
36291092 .. 36291712
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG310100.1

Sequence Viewer

Length: 237 bp
ATGGACATCTCAACATACATTACCCACCGCAGTAACCAGTTATCCAGTCGATACATGTTGTACACAATCAGTAATCACTATGGTGGCTTGGGTGGTGGTCACTATACGGCATTTGTTCATCTCGGTAAGGGTTCATGGTATGAGTTTGATGATGACAGAGTTTCTGCTGTTAATGAGGAGAGGATTAAGACTTCGGCAGCATATGTTCTTTTCTCCCGAAGAGTACCAGATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 map04137
Pfam Domains
Protein Families
UCH

Protein Analysis

78

Amino Acids

8.91

Weight (kDa)

6.9

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 2 - 71 3.3e-16 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0029453)

Species Orthologous Gene IDs
pyrus_communis pycom14g03590
rosa_samantha Rh7DG310100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 28
AfaI GTAC 2 cut(s) 62, 225
AflIII ACRYGT 1 cut(s) 54
AleI CACNNNNGTG 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 123
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 37, 45
BseNI ACTGG 2 cut(s) 37, 45
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 60
BspACI CCGC 1 cut(s) 28
BsrGI TGTACA 1 cut(s) 60
BsrI ACTGG 2 cut(s) 37, 45
Bst6I CTCTTC 1 cut(s) 214
BstAUI TGTACA 1 cut(s) 60
BstNSI RCATGY 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 61, 224
CviAII CATG 2 cut(s) 55, 135
CviJI RGCY 1 cut(s) 87
CviKI_1 RGCY 1 cut(s) 87
CviQI GTAC 2 cut(s) 61, 224
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
FaeI CATG 2 cut(s) 58, 138
FaiI YATR 9 cut(s) 16, 56, 81, 105, 136, 141, 202, 204, 235
FatI CATG 2 cut(s) 54, 134
FauNDI CATATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 198
Hin1II CATG 2 cut(s) 58, 138
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 216
Hpy8I GTNNAC 1 cut(s) 63
Hsp92II CATG 2 cut(s) 58, 138
LpnPI CCDG 2 cut(s) 50, 58
Lsp1109I GCAGC 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 32, 98
MboII GAAGA 1 cut(s) 231
MnlI CCTC 2 cut(s) 169, 174
MseI TTAA 2 cut(s) 171, 186
MslI CAYNNNNRTG 1 cut(s) 81
NdeI CATATG 1 cut(s) 202
NlaIII CATG 2 cut(s) 58, 138
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 1 cut(s) 58
OliI CACNNNNGTG 1 cut(s) 81
PciI ACATGT 1 cut(s) 54
PkrI GCNGC 1 cut(s) 199
PscI ACATGT 1 cut(s) 54
RsaI GTAC 2 cut(s) 62, 225
RsaNI GTAC 2 cut(s) 61, 224
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 171, 186
SatI GCNGC 1 cut(s) 198
SgeI CNNG 7 cut(s) 49, 57, 67, 100, 134, 147, 228
SmiMI CAYNNNNRTG 1 cut(s) 81
SsiI CCGC 1 cut(s) 28
TaqI TCGA 1 cut(s) 49
TatI WGTACW 1 cut(s) 60
Tru1I TTAA 2 cut(s) 171, 186
Tru9I TTAA 2 cut(s) 171, 186
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 107, 123
XceI RCATGY 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.