Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0029454

Physical Location & Seq

Genomic Coordinates Forward (+)

3705346 .. 3706835

Gene Structure 1490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGACATGCCTCCCCCAGGTTTGCGACAGACCATGCTGTTTAGTGCTACGTTTCCAAAGGAGATACAGCGACTGGCATCGGATTTTCTTTCAAAATATATATTTTTGGCTGTTGGAAGGGTTGGTTCAAGTACTGATTTAATTGTTCAAAGAGTTGAATTTGTTCATGAGTCTGATAAACGAAGTCATCTCATGGACCTCCTTCATGCACAGAGGGAAAATGGAGCTCATGGCAAGCAATCTCTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCATTAGAACACTGGTTGTGCATGAATGGGTTTCCGGCAACTACTATTCATGGTGACAGAACACAACAGGAAAGAGAACATGCATTGAGATCATTCAAGAGTGGAAATACACCAATTTTAGTGGCAACAGATGTTGCTGCACGTGGTCTAGATATCCCCCATGTAGCTCATGTGGTAAATTTTGATCTTCCAAATGACGTTTATGATTATGTTCACCGGATAGGTCGGACAGGGCGAGCTGGCAAATCAGGATTGGCAACTGCCTTCTTTAATGAGAACAATCTCTCATTGGCAAAACCACTCGCTGCAGCAAGATCGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042579 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

202

Amino Acids

22.25

Weight (kDa)

8.76

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	60 - 175	3.4e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029454)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g04270
rosa_samantha	Rh5CG580000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	158, 460
AcvI	CACGTG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	5 cut(s)	93, 129, 149, 158, 379
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	4 cut(s)	227, 278, 449, 521
AluI	AGCT	4 cut(s)	227, 278, 449, 521
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	73
ApeKI	GCWGC	3 cut(s)	419, 587, 590
ApoI	RAATTY	2 cut(s)	158, 460
Asp700I	GAANNNNTTC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	347, 488
AvaII	GGWCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	229
BbrPI	CACGTG	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	3 cut(s)	406, 574, 602
BcgI	CGANNNNNNTGC	1 cut(s)	579
BciT130I	CCWGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	431
BfmI	CTRYAG	1 cut(s)	588
BisI	GCNGC	3 cut(s)	420, 588, 591
BlsI	GCNGC	3 cut(s)	421, 589, 592
BmcAI	AGTACT	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	86, 271
Bsa29I	ATCGAT	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	78, 299
BseBI	CCWGG	1 cut(s)	18
BseCI	ATCGAT	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseNI	ACTGG	2 cut(s)	78, 299
BseXI	GCAGC	3 cut(s)	406, 574, 602
BsgI	GTGCAG	1 cut(s)	405
BshVI	ATCGAT	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	317, 499
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	371, 466, 596, 600
BspDI	ATCGAT	1 cut(s)	599
BspHI	TCATGA	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	592
BsrI	ACTGG	2 cut(s)	78, 299
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	4 cut(s)	371, 466, 596, 600
Bst2UI	CCWGG	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	236, 519, 523
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstKTI	GATC	4 cut(s)	374, 469, 599, 603
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	4 cut(s)	371, 466, 596, 600
BstNI	CCWGG	1 cut(s)	18
BstNSI	RCATGY	2 cut(s)	10, 365
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	3 cut(s)	406, 574, 602
Bsu15I	ATCGAT	1 cut(s)	599
BsuTUI	ATCGAT	1 cut(s)	599
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	236, 519, 523
CaiI	CAGNNNCTG	1 cut(s)	73
CciI	TCATGA	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	196
ClaI	ATCGAT	1 cut(s)	599
Csp6I	GTAC	1 cut(s)	132
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviJI	RGCY	5 cut(s)	110, 227, 278, 449, 521
CviKI_1	RGCY	5 cut(s)	110, 227, 278, 449, 521
CviQI	GTAC	1 cut(s)	132
DpnI	GATC	4 cut(s)	373, 468, 598, 602
DpnII	GATC	4 cut(s)	371, 466, 596, 600
Ecl136II	GAGCTC	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	227
Eco72I	CACGTG	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	436
EcoT22I	ATGCAT	2 cut(s)	286, 367
EcoT38I	GRGCYC	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	420, 588, 591
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	3 cut(s)	420, 588, 591
FspBI	CTAG	1 cut(s)	431
GluI	GCNGC	3 cut(s)	420, 588, 591
HapII	CCGG	2 cut(s)	317, 499
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	2 cut(s)	317, 499
HphI	GGTGA	2 cut(s)	347, 488
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	4 cut(s)	82, 175, 246, 510
Hpy188III	TCNNGA	4 cut(s)	167, 379, 431, 531
Hpy8I	GTNNAC	1 cut(s)	496
HpyAV	CCTTC	4 cut(s)	111, 212, 265, 556
HpyCH4IV	ACGT	3 cut(s)	50, 424, 480
HpyCH4V	TGCA	6 cut(s)	209, 284, 303, 365, 422, 590
HpySE526I	ACGT	3 cut(s)	50, 424, 480
Kzo9I	GATC	4 cut(s)	371, 466, 596, 600
LmnI	GCTCC	2 cut(s)	224, 275
Lsp1109I	GCAGC	3 cut(s)	406, 574, 602
LweI	GCATC	2 cut(s)	86, 271
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	3 cut(s)	50, 424, 480
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	4 cut(s)	373, 468, 598, 602
MboI	GATC	4 cut(s)	371, 466, 596, 600
MboII	GAAGA	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	4 cut(s)	141, 158, 396, 460
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	2 cut(s)	94, 488
MnlI	CCTC	3 cut(s)	21, 207, 209
Mph1103I	ATGCAT	2 cut(s)	286, 367
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	2 cut(s)	140, 552
MspI	CCGG	2 cut(s)	317, 499
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
NdeII	GATC	4 cut(s)	371, 466, 596, 600
NmuCI	GTSAC	1 cut(s)	335
NsiI	ATGCAT	2 cut(s)	286, 367
NspI	RCATGY	2 cut(s)	10, 365
PagI	TCATGA	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	514
PdmI	GAANNNNTTC	1 cut(s)	162
PkrI	GCNGC	3 cut(s)	421, 589, 592
PleI	GAGTC	1 cut(s)	178
PmaCI	CACGTG	1 cut(s)	425
PmlI	CACGTG	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	425
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	16
PspCI	CACGTG	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	73
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	140, 552
SatI	GCNGC	3 cut(s)	420, 588, 591
Sau3AI	GATC	4 cut(s)	371, 466, 596, 600
Sau96I	GGNCC	1 cut(s)	196
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	2 cut(s)	86, 271
SfcI	CTRYAG	1 cut(s)	588
SinI	GGWCC	1 cut(s)	196
Sse9I	AATT	4 cut(s)	141, 158, 396, 460
SspMI	CTAG	1 cut(s)	431
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	16
TaiI	ACGT	3 cut(s)	53, 427, 483
TaqI	TCGA	1 cut(s)	599
TasI	AATT	4 cut(s)	141, 158, 396, 460
TatI	WGTACW	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	140, 552
Tru9I	TTAA	2 cut(s)	140, 552
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	3 cut(s)	419, 587, 590
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	4 cut(s)	155, 194, 320, 320
TspRI	CASTG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	196
XagI	CCTNNNNNAGG	1 cut(s)	15
XapI	RAATTY	2 cut(s)	158, 460
XbaI	TCTAGA	1 cut(s)	430
XceI	RCATGY	2 cut(s)	10, 365
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	1 cut(s)	431
ZrmI	AGTACT	1 cut(s)	133
Zsp2I	ATGCAT	2 cut(s)	286, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.