Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0029454

Physical Location & Seq

Genomic Coordinates Reverse (-)

82436770 .. 82439008

Gene Structure 2239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG580000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCTGGACATGGGTTTTGAACCGCAAATAAGGAAAATTGTGGAACAAATGGACATGCCTCCACCAGGTGTGCGACAGACTATGTTGTTCAGTGCCACTTTTCCAAAAGAAATACAGAGACTGGCCTCTGATTTTCTTTCCAAGTACATCTTTCTGGCTGTTGGAAGGGTGGGTTCTAGTACTGATTTGATTGTCCAACGAGTGGAATTTGTTCATGAATCTGATAAAAGAAGTCACCTTATGGACCTTCTGCATGCACAAAGGGCCAATGGTACACAGGGGAAGCAAGCTCTGACGTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCCCTGGAACACTGGTTGTGTATGAATGGTTTTCCTGCAACTACTATTCATGGCGACAGAACACAGCAGGAAAGAGAACAAGCATTGAGGTCATTTAAGAGCGGCAATACTCCAATTTTGGTGGCTACTGATGTTGCTGCACGTGGGCTTGATATTCCTCACGTTGCACATGTTGTCAACTTTGATCTTCCAAATGACATTGATGATTATGTTCACCGCATTGGTCGTACTGGACGAGCTGGGAAATCTGGTTTGGCTACTGCCTTCTTTAATGAGAACAATTCATCACTGGCCAAGTCTCTAGCAGATTTGATGCAAGAATCAAATCAAGAGGTACCTGCTTGGTTGTCACGGTATGCAGCTCGATCCTCTTACGGTGGTGGGAGGAACCGCCGTTCTGGGGGAGGTCGGTTTGGTGGCCGTGACTTTCGAAGGGATTCCTATAGTGGCGGCGGCGGCGGCGGCGGTGGATATGGCGGTTCTGGTGGGTATGGTGGAGGAGGATATGGGGGTTCTGGTGGGTTTAGTGGAGGAGGAGGTTATGGTGCTGGGGTGACCAGTGCATGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

300

Amino Acids

32.1

Weight (kDa)

8.94

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	76 - 191	2.4e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029454)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g04270
rosa_samantha	Rh5CG580000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	676
Acc65I	GGTACC	1 cut(s)	664
AccB1I	GGYRCC	1 cut(s)	664
AccB7I	CCANNNNNTGG	2 cut(s)	202, 894
AccBSI	CCGCTC	1 cut(s)	432
AclWI	GGATC	1 cut(s)	690
AcoI	YGGCCR	2 cut(s)	621, 748
AcsI	RAATTY	1 cut(s)	206
AcvI	CACGTG	1 cut(s)	473
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	5 cut(s)	146, 181, 274, 559, 666
AfiI	CCNNNNNNNGG	4 cut(s)	65, 202, 730, 894
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	1 cut(s)	20
AjnI	CCWGG	2 cut(s)	64, 333
AjuI	GAANNNNNNNTTGG	2 cut(s)	566, 598
AloI	GAACNNNNNNTCC	2 cut(s)	709, 741
AluBI	AGCT	4 cut(s)	290, 326, 569, 692
AluI	AGCT	4 cut(s)	290, 326, 569, 692
Alw26I	GTCTC	3 cut(s)	112, 305, 633
AlwI	GGATC	1 cut(s)	690
AlwNI	CAGNNNCTG	1 cut(s)	121
AoxI	GGCC	4 cut(s)	123, 264, 621, 748
ApeKI	GCWGC	2 cut(s)	467, 689
ApoI	RAATTY	1 cut(s)	206
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	2 cut(s)	210, 766
Asp718I	GGTACC	1 cut(s)	664
AspS9I	GGNCC	2 cut(s)	244, 264
AsuHPI	GGTGA	3 cut(s)	227, 536, 895
AsuII	TTCGAA	1 cut(s)	760
AvaII	GGWCC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	664
BbrPI	CACGTG	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	454, 701
BceAI	ACGGC	2 cut(s)	708, 735
BciT130I	CCWGG	2 cut(s)	66, 335
BcoDI	GTCTC	3 cut(s)	112, 305, 633
BfaI	CTAG	2 cut(s)	177, 632
BfmI	CTRYAG	1 cut(s)	772
BfuAI	ACCTGC	1 cut(s)	676
BisI	GCNGC	8 cut(s)	433, 468, 690, 781, 784, 787, 790, 793
BlsI	GCNGC	8 cut(s)	434, 469, 691, 782, 785, 788, 791, 794
BmcAI	AGTACT	1 cut(s)	181
Bme1390I	CCNGG	2 cut(s)	66, 335
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	2 cut(s)	244, 264
BmiI	GGNNCC	2 cut(s)	666, 719
BmrFI	CCNGG	2 cut(s)	66, 335
BmsI	GCATC	1 cut(s)	633
Bpu14I	TTCGAA	1 cut(s)	760
BsaAI	YACGTR	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 202, 730, 894
Bse1I	ACTGG	5 cut(s)	126, 347, 565, 624, 888
BseBI	CCWGG	2 cut(s)	66, 335
BseDI	CCNNGG	1 cut(s)	333
BseLI	CCNNNNNNNGG	4 cut(s)	65, 202, 730, 894
BseNI	ACTGG	5 cut(s)	126, 347, 565, 624, 888
BseRI	GAGGAG	3 cut(s)	843, 876, 879
BseXI	GCAGC	2 cut(s)	454, 701
BseYI	CCCAGC	2 cut(s)	569, 878
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	4 cut(s)	125, 266, 623, 750
BshNI	GGYRCC	1 cut(s)	664
BslI	CCNNNNNNNGG	4 cut(s)	65, 202, 730, 894
BsmAI	GTCTC	3 cut(s)	112, 305, 633
BsnI	GGCC	4 cut(s)	125, 266, 623, 750
Bsp119I	TTCGAA	1 cut(s)	760
Bsp143I	GATC	2 cut(s)	514, 695
BspANI	GGCC	4 cut(s)	125, 266, 623, 750
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	666, 719
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	1 cut(s)	690
BspT104I	TTCGAA	1 cut(s)	760
BspT107I	GGYRCC	1 cut(s)	664
BsrBI	CCGCTC	1 cut(s)	432
BsrI	ACTGG	5 cut(s)	126, 347, 565, 624, 888
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	2 cut(s)	514, 695
Bst2UI	CCWGG	2 cut(s)	66, 335
Bst4CI	ACNGT	2 cut(s)	684, 707
BstBAI	YACGTR	1 cut(s)	473
BstBI	TTCGAA	1 cut(s)	760
BstC8I	GCNNGC	2 cut(s)	255, 288
BstEII	GGTNACC	1 cut(s)	883
BstENI	CCTNNNNNAGG	1 cut(s)	63
BstKTI	GATC	2 cut(s)	517, 698
BstMAI	GTCTC	3 cut(s)	112, 305, 633
BstMBI	GATC	2 cut(s)	514, 695
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 786, 789, 792
BstNI	CCWGG	2 cut(s)	66, 335
BstNSI	RCATGY	3 cut(s)	58, 257, 503
BstPI	GGTNACC	1 cut(s)	883
BstSCI	CCNGG	2 cut(s)	64, 333
BstSFI	CTRYAG	1 cut(s)	772
BstV1I	GCAGC	2 cut(s)	454, 701
BsuRI	GGCC	4 cut(s)	125, 266, 623, 750
BtsIMutI	CAGTG	4 cut(s)	97, 340, 617, 895
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	2 cut(s)	255, 288
CaiI	CAGNNNCTG	1 cut(s)	121
CciI	TCATGA	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	244, 264
CsiI	ACCWGGT	1 cut(s)	64
Csp6I	GTAC	5 cut(s)	145, 180, 273, 558, 665
CspCI	CAANNNNNGTGG	2 cut(s)	432, 467
CviAII	CATG	7 cut(s)	10, 55, 215, 254, 380, 500, 894
CviQI	GTAC	5 cut(s)	145, 180, 273, 558, 665
DpnI	GATC	2 cut(s)	516, 697
DpnII	GATC	2 cut(s)	514, 695
DraIII	CACNNNGTG	1 cut(s)	68
EaeI	YGGCCR	2 cut(s)	621, 748
Eco47I	GGWCC	1 cut(s)	244
Eco72I	CACGTG	1 cut(s)	473
Eco91I	GGTNACC	1 cut(s)	883
EcoNI	CCTNNNNNAGG	1 cut(s)	63
EcoO65I	GGTNACC	1 cut(s)	883
EcoRII	CCWGG	2 cut(s)	64, 333
FaeI	CATG	7 cut(s)	13, 58, 218, 257, 383, 503, 897
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	7 cut(s)	9, 54, 214, 253, 379, 499, 893
Fnu4HI	GCNGC	8 cut(s)	433, 468, 690, 781, 784, 787, 790, 793
Fsp4HI	GCNGC	8 cut(s)	433, 468, 690, 781, 784, 787, 790, 793
FspBI	CTAG	2 cut(s)	177, 632
GluI	GCNGC	8 cut(s)	433, 468, 690, 781, 784, 787, 790, 793
GsaI	CCCAGC	2 cut(s)	573, 882
HaeIII	GGCC	4 cut(s)	125, 266, 623, 750
Hin1II	CATG	7 cut(s)	13, 58, 218, 257, 383, 503, 897
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	4 cut(s)	218, 329, 650, 767
HphI	GGTGA	3 cut(s)	227, 536, 895
Hpy166II	GTNNAC	3 cut(s)	275, 508, 544
Hpy188I	TCNGA	3 cut(s)	130, 223, 294
Hpy188III	TCNNGA	2 cut(s)	215, 659
Hpy8I	GTNNAC	3 cut(s)	275, 508, 544
HpyAV	CCTTC	5 cut(s)	159, 257, 313, 604, 756
HpyCH4III	ACNGT	2 cut(s)	684, 707
HpyCH4IV	ACGT	3 cut(s)	296, 472, 492
HpyCH4V	TGCA	8 cut(s)	253, 257, 368, 470, 497, 646, 689, 893
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 786, 789, 792
HpySE526I	ACGT	3 cut(s)	296, 472, 492
Hsp92II	CATG	7 cut(s)	13, 58, 218, 257, 383, 503, 897
KpnI	GGTACC	1 cut(s)	668
Kzo9I	GATC	2 cut(s)	514, 695
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	2 cut(s)	454, 701
LweI	GCATC	1 cut(s)	633
MabI	ACCWGGT	1 cut(s)	64
MaeI	CTAG	2 cut(s)	177, 632
MaeII	ACGT	3 cut(s)	296, 472, 492
MaeIII	GTNAC	4 cut(s)	233, 678, 752, 883
MalI	GATC	2 cut(s)	516, 697
MbiI	CCGCTC	1 cut(s)	432
MboI	GATC	2 cut(s)	514, 695
MboII	GAAGA	1 cut(s)	509
MlsI	TGGCCA	1 cut(s)	623
MluCI	AATT	4 cut(s)	36, 206, 444, 610
MluNI	TGGCCA	1 cut(s)	623
MmeI	TCCRAC	2 cut(s)	142, 220
Mox20I	TGGCCA	1 cut(s)	623
MroXI	GAANNNNTTC	2 cut(s)	210, 766
MscI	TGGCCA	1 cut(s)	623
MseI	TTAA	2 cut(s)	426, 600
Msp20I	TGGCCA	1 cut(s)	623
MspR9I	CCNGG	2 cut(s)	66, 335
MvaI	CCWGG	2 cut(s)	66, 335
MwoI	GCNNNNNNNGC	4 cut(s)	263, 786, 789, 792
NdeII	GATC	2 cut(s)	514, 695
NlaIII	CATG	7 cut(s)	13, 58, 218, 257, 383, 503, 897
NlaIV	GGNNCC	2 cut(s)	666, 719
NmuCI	GTSAC	4 cut(s)	233, 678, 752, 883
NspI	RCATGY	3 cut(s)	58, 257, 503
NspV	TTCGAA	1 cut(s)	760
PaeI	GCATGC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	214
PciI	ACATGT	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	562
PdmI	GAANNNNTTC	2 cut(s)	210, 766
PfeI	GAWTC	4 cut(s)	218, 329, 650, 767
PflMI	CCANNNNNTGG	2 cut(s)	202, 894
PkrI	GCNGC	8 cut(s)	434, 469, 691, 782, 785, 788, 791, 794
PmaCI	CACGTG	1 cut(s)	473
PmlI	CACGTG	1 cut(s)	473
Ppu21I	YACGTR	1 cut(s)	473
PscI	ACATGT	1 cut(s)	499
Psp6I	CCWGG	2 cut(s)	64, 333
PspCI	CACGTG	1 cut(s)	473
PspEI	GGTNACC	1 cut(s)	883
PspFI	CCCAGC	2 cut(s)	569, 878
PspGI	CCWGG	2 cut(s)	64, 333
PspN4I	GGNNCC	2 cut(s)	666, 719
PspPI	GGNCC	2 cut(s)	244, 264
PstNI	CAGNNNCTG	1 cut(s)	121
RsaI	GTAC	5 cut(s)	146, 181, 274, 559, 666
RsaNI	GTAC	5 cut(s)	145, 180, 273, 558, 665
SaqAI	TTAA	2 cut(s)	426, 600
SatI	GCNGC	8 cut(s)	433, 468, 690, 781, 784, 787, 790, 793
Sau3AI	GATC	2 cut(s)	514, 695
Sau96I	GGNCC	2 cut(s)	244, 264
ScaI	AGTACT	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	66, 335
SexAI	ACCWGGT	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	633
SfcI	CTRYAG	1 cut(s)	772
SfuI	TTCGAA	1 cut(s)	760
SinI	GGWCC	1 cut(s)	244
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	4 cut(s)	36, 206, 444, 610
SspMI	CTAG	2 cut(s)	177, 632
StyD4I	CCNGG	2 cut(s)	64, 333
TaaI	ACNGT	2 cut(s)	684, 707
TaiI	ACGT	3 cut(s)	299, 475, 495
TaqI	TCGA	2 cut(s)	694, 760
TasI	AATT	4 cut(s)	36, 206, 444, 610
TatI	WGTACW	2 cut(s)	144, 179
TauI	GCSGC	6 cut(s)	435, 783, 786, 789, 792, 795
TfiI	GAWTC	4 cut(s)	218, 329, 650, 767
Tru1I	TTAA	2 cut(s)	426, 600
Tru9I	TTAA	2 cut(s)	426, 600
TscAI	CASTG	4 cut(s)	97, 347, 624, 895
TseFI	GTSAC	4 cut(s)	233, 678, 752, 883
TseI	GCWGC	2 cut(s)	467, 689
Tsp45I	GTSAC	4 cut(s)	233, 678, 752, 883
TspDTI	ATGAA	5 cut(s)	203, 231, 368, 368, 603
TspRI	CASTG	4 cut(s)	97, 347, 624, 895
Van91I	CCANNNNNTGG	2 cut(s)	202, 894
VpaK11BI	GGWCC	1 cut(s)	244
XagI	CCTNNNNNAGG	1 cut(s)	63
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	3 cut(s)	58, 257, 503
XmnI	GAANNNNTTC	2 cut(s)	210, 766
XspI	CTAG	2 cut(s)	177, 632
ZrmI	AGTACT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.