pycom14g05220

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0028346
Physical Location & Seq
Reverse (-)
5006627 .. 5007907
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 636 bp
ATGGGGGACGGAAACGGAAAAAGAAAGAAAGGTAAGCATGAGTACAACTCGGTAGACCGAATCAGCGAGTTGCCAGACGAAGTTCTTGTCAGTATATTGCCTTTCTTGCCGCTCAAGAAAGCCGTTTCAATTTGTCTCCTGCTGTTCCAAGTCCTCACCCTTCTGCATCCATTGGGTTCAAATCCCTCAAAGTTCATTGTTTCGAAAGTGTTGGTGAGGCTGGAAAAGCTCTCAACTACATCATGTCTAACTGTCCAGTTCTCAAACGATTATCAGTACTACTCCAATGATTTGGTTAATTTAAGAGTAGTCAATCTGTCGAGCGCACTGAAGTACATAGAGATACGACAATGTTGCAAGATCGAGAGCATTGATATTTGTGGCGCAAATCTTGTATCGTTTTGTATCGGAGGTCGGATAAACCTTCTTAGGAATGTACCGCAACTTGTAGATGTATCCATCTGTGCTGACAATGATGGATTCATAAAGGCTGCCTTGAATCAACTTCCATGTTGGTTTTCTCAGCTGGAGACTCTCAAACTGGATGGAATACTGGTTAGTGCACTTGAGTTTCTATTCAAGAACACTGGGCAGAAGAAACGAAAAGAAAGATACTCCCCCCAAATGCTCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

212

Amino Acids

23.67

Weight (kDa)

8.99

Isoelectric Point (pI)

30.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 94 - 182 2.9e-06 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028346)

Species Orthologous Gene IDs
malus_domestica MD14G1064500.v1.1
pyrus_communis pycom14g05220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 112
AccI GTMKAC 1 cut(s) 54
AciI CCGC 2 cut(s) 110, 440
AcuI CTGAAG 1 cut(s) 350
AfaI GTAC 4 cut(s) 44, 278, 335, 438
AgsI TTSAA 4 cut(s) 129, 180, 499, 580
AluBI AGCT 2 cut(s) 229, 526
AluI AGCT 2 cut(s) 229, 526
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 2 cut(s) 140, 524
Alw44I GTGCAC 1 cut(s) 561
ApaLI GTGCAC 1 cut(s) 561
ApeKI GCWGC 1 cut(s) 491
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AspLEI GCGC 2 cut(s) 326, 386
AsuHPI GGTGA 2 cut(s) 148, 226
AsuII TTCGAA 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 565
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 1 cut(s) 478
BccI CCATC 3 cut(s) 467, 470, 539
BceAI ACGGC 1 cut(s) 107
BcgI CGANNNNNNTGC 2 cut(s) 336, 370
BciVI GTATCC 1 cut(s) 466
BcoDI GTCTC 2 cut(s) 140, 524
BfuI GTATCC 1 cut(s) 466
BisI GCNGC 2 cut(s) 110, 492
BlsI GCNGC 2 cut(s) 111, 493
BmcAI AGTACT 1 cut(s) 278
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 1 cut(s) 175
BmuI ACTGGG 1 cut(s) 597
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 1 cut(s) 548
Bpu14I TTCGAA 1 cut(s) 203
BpuEI CTTGAG 2 cut(s) 98, 587
Bse1I ACTGG 4 cut(s) 256, 546, 558, 592
BseGI GGATG 2 cut(s) 166, 550
BseMII CTCAG 1 cut(s) 536
BseNI ACTGG 4 cut(s) 256, 546, 558, 592
BseSI GKGCMC 1 cut(s) 565
BseXI GCAGC 1 cut(s) 478
BsiHKAI GWGCWC 1 cut(s) 565
BslFI GGGAC 1 cut(s) 20
BsmAI GTCTC 2 cut(s) 140, 524
BsmFI GGGAC 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 1 cut(s) 360
BspACI CCGC 2 cut(s) 110, 440
BspCNI CTCAG 1 cut(s) 535
BspT104I TTCGAA 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 112
BsrI ACTGG 4 cut(s) 256, 546, 558, 592
BssMI GATC 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 203
BstDEI CTNAG 2 cut(s) 428, 522
BstF5I GGATG 2 cut(s) 166, 550
BstHHI GCGC 2 cut(s) 326, 386
BstKTI GATC 1 cut(s) 363
BstMAI GTCTC 2 cut(s) 140, 524
BstMBI GATC 1 cut(s) 360
BstMWI GCNNNNNNNGC 2 cut(s) 106, 226
BstSLI GKGCMC 1 cut(s) 565
BstV1I GCAGC 1 cut(s) 478
BstXI CCANNNNNNTGG 1 cut(s) 292
BsuI GTATCC 1 cut(s) 466
BtsCI GGATG 2 cut(s) 166, 550
BtsIMutI CAGTG 2 cut(s) 326, 585
CfoI GCGC 2 cut(s) 326, 386
Csp6I GTAC 4 cut(s) 43, 277, 334, 437
CviAII CATG 4 cut(s) 38, 243, 510, 633
CviJI RGCY 5 cut(s) 122, 220, 229, 491, 526
CviKI_1 RGCY 5 cut(s) 122, 220, 229, 491, 526
CviQI GTAC 4 cut(s) 43, 277, 334, 437
DdeI CTNAG 2 cut(s) 428, 522
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 350
FaeI CATG 4 cut(s) 41, 246, 513, 636
FaiI YATR 7 cut(s) 39, 95, 244, 338, 485, 511, 634
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FaqI GGGAC 1 cut(s) 20
FatI CATG 4 cut(s) 37, 242, 509, 632
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 2 cut(s) 110, 492
FokI GGATG 2 cut(s) 153, 557
Fsp4HI GCNGC 2 cut(s) 110, 492
GlaI GCGC 2 cut(s) 325, 385
GluI GCNGC 2 cut(s) 110, 492
GsuI CTGGAG 1 cut(s) 548
HhaI GCGC 2 cut(s) 326, 386
Hin1II CATG 4 cut(s) 41, 246, 513, 636
Hin6I GCGC 2 cut(s) 324, 384
HinP1I GCGC 2 cut(s) 324, 384
HinfI GANTC 4 cut(s) 60, 480, 499, 532
HphI GGTGA 2 cut(s) 148, 226
Hpy166II GTNNAC 2 cut(s) 55, 563
Hpy188I TCNGA 2 cut(s) 410, 417
Hpy188III TCNNGA 3 cut(s) 115, 364, 580
Hpy8I GTNNAC 2 cut(s) 55, 563
HpyAV CCTTC 2 cut(s) 170, 434
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 3 cut(s) 166, 357, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 226
HpyF3I CTNAG 2 cut(s) 428, 522
Hsp92II CATG 4 cut(s) 41, 246, 513, 636
HspAI GCGC 2 cut(s) 324, 384
Kzo9I GATC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 633
LpnPI CCDG 8 cut(s) 87, 152, 206, 269, 512, 527, 539, 573
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 1 cut(s) 175
MalI GATC 1 cut(s) 362
MbiI CCGCTC 1 cut(s) 112
MboI GATC 1 cut(s) 360
MboII GAAGA 1 cut(s) 607
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 2 cut(s) 129, 298
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 4 cut(s) 164, 196, 210, 404
MseI TTAA 2 cut(s) 297, 302
MspA1I CMGCKG 1 cut(s) 526
MwoI GCNNNNNNNGC 2 cut(s) 106, 226
NdeII GATC 1 cut(s) 360
NlaIII CATG 4 cut(s) 41, 246, 513, 636
NspV TTCGAA 1 cut(s) 203
PfeI GAWTC 3 cut(s) 60, 480, 499
PkrI GCNGC 2 cut(s) 111, 493
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
PvuII CAGCTG 1 cut(s) 526
RsaI GTAC 4 cut(s) 44, 278, 335, 438
RsaNI GTAC 4 cut(s) 43, 277, 334, 437
SaqAI TTAA 2 cut(s) 297, 302
SatI GCNGC 2 cut(s) 110, 492
Sau3AI GATC 1 cut(s) 360
ScaI AGTACT 1 cut(s) 278
SchI GAGTC 1 cut(s) 526
SduI GDGCHC 1 cut(s) 565
SetI ASST 5 cut(s) 34, 231, 415, 426, 528
SfaNI GCATC 1 cut(s) 175
SfuI TTCGAA 1 cut(s) 203
SmlI CTYRAG 2 cut(s) 113, 566
SmoI CTYRAG 2 cut(s) 113, 566
Sse9I AATT 2 cut(s) 129, 298
SsiI CCGC 2 cut(s) 110, 440
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 3 cut(s) 203, 320, 363
TaqII GACCGA 1 cut(s) 72
TasI AATT 2 cut(s) 129, 298
TatI WGTACW 3 cut(s) 42, 276, 333
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 3 cut(s) 60, 480, 499
Tru1I TTAA 2 cut(s) 297, 302
Tru9I TTAA 2 cut(s) 297, 302
TscAI CASTG 2 cut(s) 333, 592
TseI GCWGC 1 cut(s) 491
TspDTI ATGAA 2 cut(s) 184, 472
TspGWI ACGGA 2 cut(s) 24, 30
TspRI CASTG 2 cut(s) 333, 592
VneI GTGCAC 1 cut(s) 561
XmiI GTMKAC 1 cut(s) 54
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.