Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0029455

Physical Location & Seq

Genomic Coordinates Reverse (-)

5038471 .. 5039197

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g05260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAACTCAAGTGACAGCTTCCGTTATTCTTCTCCTCATTCGAGACGTTCGACTAGCACTGTGCCTAAGAAGTCTTCTTATCTAGGCTTCGTGAATGATTTCGACATTCATGGAAGCCAAAGATATGGTCTATCACCTCCTGTGCAAATGCAATCACATTTTTATGCTAATGTGCAGAATGAGGGTTTTACTAATTTTCACAACAATACTTCAGAAGCAATGCAGGATAATGCTACGATGCAGCCCCAAAGTCCATCCATACTTGAAAGTGCCTCGTTTGAAACGCCTAACTACAATAGCTTTTCTTTTTTAACCAATCCATTTTCATCATCACTGCCTCTGGAATGTGATACGGGTTTGATTGGTGAAAACTATGGGAAAAATAATGCTGTGAACATTTTTGGAGGACCATTGATGAGCATCGATGAAGATAACAAGGGATGTACAAGTCCGATGAATAGGCAACGTAGACATCCGCGTCAAAACTCAAAACACACAATTGGCAACAAAAAATCTGTTTTTCGGGGAGTTTCAAGGTATGTCAACTTATACTTGTTTCGAATTGTTATAAGCAATTTTCATATGTTACTTTTCACCCAAGTGAAAGTGTTGATAGTTAATTTTCTTCCTAGCTACCGGGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

216

Amino Acids

24.38

Weight (kDa)

9.27

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029455)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g05260 pycom14g05280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	569
AasI	GACNNNNNNGTC	1 cut(s)	477
AccI	GTMKAC	1 cut(s)	469
AccII	CGCG	1 cut(s)	478
AciI	CCGC	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	445
AgsI	TTSAA	3 cut(s)	266, 281, 534
AleI	CACNNNNGTG	1 cut(s)	599
AluBI	AGCT	3 cut(s)	18, 300, 633
AluI	AGCT	3 cut(s)	18, 300, 633
Alw26I	GTCTC	2 cut(s)	37, 635
ApeKI	GCWGC	1 cut(s)	241
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
Asp700I	GAANNNNTTC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	3 cut(s)	126, 377, 586
AsuII	TTCGAA	1 cut(s)	559
AvaII	GGWCC	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	638
BcoDI	GTCTC	2 cut(s)	37, 635
BfaI	CTAG	3 cut(s)	54, 83, 630
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	638
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	638
BmsI	GCATC	2 cut(s)	228, 429
BpiI	GAAGAC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	559
BpuMI	CCSGG	1 cut(s)	638
Bsa29I	ATCGAT	1 cut(s)	423
BsaBI	GATNNNNATC	1 cut(s)	419
Bse3DI	GCAATG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	419
BseCI	ATCGAT	1 cut(s)	423
BseGI	GGATG	3 cut(s)	254, 446, 472
BseJI	GATNNNNATC	1 cut(s)	419
BseMI	GCAATG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	478
BshVI	ATCGAT	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	637
BsmAI	GTCTC	2 cut(s)	37, 635
BsmBI	CGTCTC	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	559
Bsp1407I	TGTACA	1 cut(s)	443
BspACI	CCGC	1 cut(s)	476
BspDI	ATCGAT	1 cut(s)	423
BspFNI	CGCG	1 cut(s)	478
BspT104I	TTCGAA	1 cut(s)	559
BsrDI	GCAATG	1 cut(s)	225
BsrGI	TGTACA	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	443
BstBI	TTCGAA	1 cut(s)	559
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	3 cut(s)	254, 446, 472
BstFNI	CGCG	1 cut(s)	478
BstMAI	GTCTC	2 cut(s)	37, 635
BstSCI	CCNGG	1 cut(s)	636
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	125
Bsu15I	ATCGAT	1 cut(s)	423
BsuTUI	ATCGAT	1 cut(s)	423
BtsCI	GGATG	3 cut(s)	254, 446, 472
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	2 cut(s)	57, 332
Cfr13I	GGNCC	1 cut(s)	407
ClaI	ATCGAT	1 cut(s)	423
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	6 cut(s)	18, 87, 117, 244, 300, 633
CviKI_1	RGCY	6 cut(s)	18, 87, 117, 244, 300, 633
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	1 cut(s)	66
DrdI	GACNNNNNNGTC	1 cut(s)	477
DseDI	GACNNNNNNGTC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	1 cut(s)	113
FatI	CATG	1 cut(s)	109
FauNDI	CATATG	1 cut(s)	582
FblI	GTMKAC	1 cut(s)	469
Fnu4HI	GCNGC	1 cut(s)	242
FokI	GGATG	3 cut(s)	241, 453, 459
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	3 cut(s)	54, 83, 630
GluI	GCNGC	1 cut(s)	242
HapII	CCGG	1 cut(s)	637
HgaI	GACGC	1 cut(s)	467
Hin1II	CATG	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HpaII	CCGG	1 cut(s)	637
HphI	GGTGA	3 cut(s)	126, 377, 586
Hpy166II	GTNNAC	3 cut(s)	394, 470, 544
Hpy188I	TCNGA	2 cut(s)	214, 453
Hpy188III	TCNNGA	3 cut(s)	42, 91, 341
Hpy8I	GTNNAC	3 cut(s)	394, 470, 544
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	46, 466
HpyCH4V	TGCA	5 cut(s)	145, 151, 175, 223, 241
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	2 cut(s)	46, 466
Hsp92II	CATG	1 cut(s)	113
LpnPI	CCDG	3 cut(s)	153, 209, 326
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	228, 429
MaeI	CTAG	3 cut(s)	54, 83, 630
MaeII	ACGT	2 cut(s)	46, 466
MaeIII	GTNAC	2 cut(s)	11, 585
MboII	GAAGA	4 cut(s)	21, 66, 440, 617
MfeI	CAATTG	1 cut(s)	498
MluCI	AATT	5 cut(s)	193, 498, 561, 574, 619
MnlI	CCTC	6 cut(s)	45, 147, 175, 283, 348, 398
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	2 cut(s)	311, 618
MslI	CAYNNNNRTG	2 cut(s)	162, 599
MspI	CCGG	1 cut(s)	637
MspR9I	CCNGG	1 cut(s)	638
MunI	CAATTG	1 cut(s)	498
MvnI	CGCG	1 cut(s)	478
NciI	CCSGG	1 cut(s)	638
NdeI	CATATG	1 cut(s)	582
NlaIII	CATG	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	11
NspV	TTCGAA	1 cut(s)	559
OliI	CACNNNNGTG	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	243
PsiI	TTATAA	1 cut(s)	569
PspPI	GGNCC	1 cut(s)	407
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
RseI	CAYNNNNRTG	2 cut(s)	162, 599
SaqAI	TTAA	2 cut(s)	311, 618
SatI	GCNGC	1 cut(s)	242
Sau96I	GGNCC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	638
SetI	ASST	7 cut(s)	20, 49, 139, 302, 469, 539, 635
SfaNI	GCATC	2 cut(s)	228, 429
SfuI	TTCGAA	1 cut(s)	559
SinI	GGWCC	1 cut(s)	407
SmiMI	CAYNNNNRTG	2 cut(s)	162, 599
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	5 cut(s)	193, 498, 561, 574, 619
SsiI	CCGC	1 cut(s)	476
SspMI	CTAG	3 cut(s)	54, 83, 630
StyD4I	CCNGG	1 cut(s)	636
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	2 cut(s)	49, 469
TaqI	TCGA	5 cut(s)	41, 50, 102, 423, 559
TasI	AATT	5 cut(s)	193, 498, 561, 574, 619
TatI	WGTACW	1 cut(s)	443
Tru1I	TTAA	2 cut(s)	311, 618
Tru9I	TTAA	2 cut(s)	311, 618
TscAI	CASTG	2 cut(s)	64, 339
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	6 cut(s)	17, 98, 315, 441, 470, 569
TspGWI	ACGGA	1 cut(s)	11
TspRI	CASTG	2 cut(s)	64, 339
VpaK11BI	GGWCC	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	3 cut(s)	54, 83, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.