pycom14g06410

ABC transporter A family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0028342
Physical Location & Seq
Reverse (-)
6323985 .. 6326109
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGTTTTTAACATATGGATTAGCAATTGCATCTCCACATATTGCCTTATTCTCTGACCACAAATGTGCTTCTCTTGGTCCACTTCTTACGGGACTCATTCTTATGGTTATCTCATTCATCATGGGGCTTATAAAGACAACAGCAAGTGCAAATTCTTTTCTTAAGAACTTTTTCAGATTATCTCCAGGCTTTTGCTTTGCTGATGGACTTGTGTCACTGGCTCTTCTACGGCAAGATATGAGAGATCAATGCAATCAGGCCTTTGATTGGAATGTTACTGGTGGCTCAATTTGTTACCTTGGTATTGAGAGCGTTTGTTACTTCCTTTTGACACTTGGGCTTGAACTCTTACTTTCTAACTAG

Protein Analysis

121

Amino Acids

13.09

Weight (kDa)

6.0

Isoelectric Point (pI)

28.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_3 PF12698 5 - 112 3.1e-09 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0028342)

Species Orthologous Gene IDs
malus_domestica MD14G1075500.v1.1
pyrus_communis pycom14g06410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 131
AcsI RAATTY 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 267
AflII CTTAAG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 344
AjnI CCWGG 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 63
AoxI GGCC 1 cut(s) 258
ApoI RAATTY 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 77
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 186
BfaI CTAG 1 cut(s) 361
BfrI CTTAAG 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 38
BoxI GACNNNNGTC 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 2 cut(s) 222, 283
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 222, 283
BshFI GGCC 1 cut(s) 260
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 1 cut(s) 260
Bsp143I GATC 1 cut(s) 244
BspANI GGCC 1 cut(s) 260
BspQI GCTCTTC 1 cut(s) 228
BspTI CTTAAG 1 cut(s) 161
BsrI ACTGG 2 cut(s) 222, 283
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 228
BstAFI CTTAAG 1 cut(s) 161
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstNI CCWGG 1 cut(s) 186
BstPAI GACNNNNGTC 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 184
BsuRI GGCC 1 cut(s) 260
BtsIMutI CAGTG 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 77
CviAII CATG 1 cut(s) 121
CviJI RGCY 6 cut(s) 127, 189, 221, 260, 285, 340
CviKI_1 RGCY 6 cut(s) 127, 189, 221, 260, 285, 340
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 298
Eco147I AGGCCT 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 1 cut(s) 124
FaiI YATR 7 cut(s) 13, 15, 39, 104, 122, 131, 239
FaqI GGGAC 1 cut(s) 105
FatI CATG 1 cut(s) 120
FauNDI CATATG 1 cut(s) 13
FspBI CTAG 1 cut(s) 361
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 260
Hin1II CATG 1 cut(s) 124
HinfI GANTC 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 2 cut(s) 55, 176
Hpy8I GTNNAC 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 29, 149, 252
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 1 cut(s) 244
LguI GCTCTTC 1 cut(s) 228
LpnPI CCDG 5 cut(s) 171, 198, 203, 242, 264
LweI GCATC 1 cut(s) 38
MaeI CTAG 1 cut(s) 361
MaeIII GTNAC 4 cut(s) 213, 274, 293, 317
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 1 cut(s) 215
MfeI CAATTG 1 cut(s) 24
MluCI AATT 3 cut(s) 24, 151, 288
MlyI GAGTC 1 cut(s) 87
MroXI GAANNNNTTC 1 cut(s) 170
MseI TTAA 2 cut(s) 8, 162
MslI CAYNNNNRTG 2 cut(s) 63, 101
MspCI CTTAAG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 13
NdeII GATC 1 cut(s) 244
NlaIII CATG 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 213
OliI CACNNNNGTG 1 cut(s) 63
PceI AGGCCT 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 170
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PshAI GACNNNNGTC 1 cut(s) 211
PsiI TTATAA 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspPI GGNCC 1 cut(s) 77
RseI CAYNNNNRTG 2 cut(s) 63, 101
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 8, 162
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 186
SetI ASST 1 cut(s) 300
SfaNI GCATC 1 cut(s) 38
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 63, 101
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 3 cut(s) 24, 151, 288
SseBI AGGCCT 1 cut(s) 260
SspMI CTAG 1 cut(s) 361
StuI AGGCCT 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 298
TasI AATT 3 cut(s) 24, 151, 288
Tru1I TTAA 2 cut(s) 8, 162
Tru9I TTAA 2 cut(s) 8, 162
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 106
TspRI CASTG 1 cut(s) 222
Vha464I CTTAAG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 1 cut(s) 151
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.