Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0029457

Physical Location & Seq

Genomic Coordinates Forward (+)

13750765 .. 13752161

Gene Structure 1397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g10940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTTCTTGGGCTCTTTCGCCGGCAGCTCCAGTAACCGGTCGCTGTATAGTGACTCCTGCCAGGACAAAGTGGTCCTCCTCCTTCTGGGTTCGTTCTTCTCTGGACACAAATGTTTCTGACATGGGGGTTAACGCTCCAAAAGGGTTGTTTCCACCTGAACCGGAGCGTTACCGAGGTCCAAAGCTGAAAGTGGCCATTATCGGAGCTGGACTCGCTGGCATGTCAACCGCGGTTGAGCTTTTGGATCAAGGCCATGAGGTGGATATTTATGAGTCGAGGCCTTTCATTGGCGGCAAAGTGGGCTCTTCTGTTGATAAAAAAGGGAACCACATTGAAATGGGACTCCATGTTTTCTTTGGTTGCTACAGTAATCTTTTCCGATTAATGAAAAAGGTGGGTGCAGACGAAAATCTTCTTGTCAAGGATCATACTCACACTTTTGTAAACAAAGGGGGTAACATTGGTGAACTTGATTTTCGGTTCCCAATTGGAGCACCAATACATGGGATTCTTGCCTTTTTGTCTATTAATCAGATTAAGGTACGACTGACTTTACTGCAAATCATCATCATTGTCACATCTCATTACCCTATATATATATATATATATATATATATTTTCCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009509 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016491 GO:0016627 GO:0016635 GO:0031967 GO:0031975 GO:0042214 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046246 GO:0052886 GO:0052889 GO:0055114 GO:0071704 GO:1901175 GO:1901177 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

211

Amino Acids

23.2

Weight (kDa)

9.32

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029457)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g10940
rosa_multiflora	Rmu_co8388791.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AccB7I	CCANNNNNTGG	2 cut(s)	262, 506
AccII	CGCG	1 cut(s)	233
AciI	CCGC	3 cut(s)	231, 233, 294
AclWI	GGATC	2 cut(s)	255, 435
AcoI	YGGCCR	1 cut(s)	195
AfaI	GTAC	1 cut(s)	546
AfiI	CCNNNNNNNGG	5 cut(s)	38, 87, 262, 290, 506
AgeI	ACCGGT	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	4 cut(s)	29, 187, 209, 241
AluI	AGCT	4 cut(s)	29, 187, 209, 241
Alw21I	GWGCWC	1 cut(s)	499
AlwI	GGATC	2 cut(s)	255, 435
AoxI	GGCC	3 cut(s)	195, 253, 281
ApeKI	GCWGC	1 cut(s)	26
AseI	ATTAAT	2 cut(s)	386, 531
AsiGI	ACCGGT	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	75, 179
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	2 cut(s)	75, 179
BalI	TGGCCA	1 cut(s)	197
BanII	GRGCYC	2 cut(s)	16, 308
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	64
BfmI	CTRYAG	1 cut(s)	367
BisI	GCNGC	2 cut(s)	27, 295
BlsI	GCNGC	2 cut(s)	28, 296
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	2 cut(s)	75, 179
BmgT120I	GGNCC	2 cut(s)	75, 179
BmiI	GGNNCC	2 cut(s)	329, 485
BmrFI	CCNGG	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
BpmI	CTGGAG	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	175, 231
BsaWI	WCCGGW	2 cut(s)	38, 163
Bsc4I	CCNNNNNNNGG	5 cut(s)	38, 87, 262, 290, 506
Bse118I	RCCGGY	2 cut(s)	22, 38
Bse1I	ACTGG	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	175, 231
BseLI	CCNNNNNNNGG	5 cut(s)	38, 87, 262, 290, 506
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	233
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	3 cut(s)	197, 255, 283
BshTI	ACCGGT	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	499
BsiSI	CCGG	3 cut(s)	23, 39, 164
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	5 cut(s)	38, 87, 262, 290, 506
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	3 cut(s)	197, 255, 283
Bsp1286I	GDGCHC	3 cut(s)	16, 308, 499
Bsp143I	GATC	2 cut(s)	247, 427
BspACI	CCGC	3 cut(s)	231, 233, 294
BspANI	GGCC	3 cut(s)	197, 255, 283
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	2 cut(s)	329, 485
BspPI	GGATC	2 cut(s)	255, 435
BspQI	GCTCTTC	1 cut(s)	313
BsrFI	RCCGGY	2 cut(s)	22, 38
BsrI	ACTGG	1 cut(s)	32
BssAI	RCCGGY	2 cut(s)	22, 38
BssECI	CCNNGG	2 cut(s)	175, 231
BssMI	GATC	2 cut(s)	247, 427
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	24, 220
BstDSI	CCRYGG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	233
BstKTI	GATC	2 cut(s)	250, 430
BstMBI	GATC	2 cut(s)	247, 427
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 215, 303
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	367
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	38
BsuRI	GGCC	3 cut(s)	197, 255, 283
BtgI	CCRYGG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	24, 220
Cfr10I	RCCGGY	2 cut(s)	22, 38
Cfr13I	GGNCC	2 cut(s)	75, 179
Cfr42I	CCGCGG	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	545
CspAI	ACCGGT	1 cut(s)	38
CviAII	CATG	5 cut(s)	124, 223, 257, 350, 506
CviQI	GTAC	1 cut(s)	545
DpnI	GATC	2 cut(s)	249, 429
DpnII	GATC	2 cut(s)	247, 427
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco147I	AGGCCT	1 cut(s)	283
Eco24I	GRGCYC	2 cut(s)	16, 308
Eco47I	GGWCC	2 cut(s)	75, 179
EcoRII	CCWGG	1 cut(s)	62
EcoT38I	GRGCYC	2 cut(s)	16, 308
FaeI	CATG	5 cut(s)	127, 226, 260, 353, 509
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	5 cut(s)	123, 222, 256, 349, 505
Fnu4HI	GCNGC	2 cut(s)	27, 295
FriOI	GRGCYC	2 cut(s)	16, 308
Fsp4HI	GCNGC	2 cut(s)	27, 295
GluI	GCNGC	2 cut(s)	27, 295
GsuI	CTGGAG	1 cut(s)	15
HaeIII	GGCC	3 cut(s)	197, 255, 283
HapII	CCGG	3 cut(s)	23, 39, 164
Hin1II	CATG	5 cut(s)	127, 226, 260, 353, 509
HincII	GTYRAC	2 cut(s)	133, 228
HindII	GTYRAC	2 cut(s)	133, 228
HinfI	GANTC	5 cut(s)	55, 213, 275, 345, 511
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	3 cut(s)	23, 39, 164
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	4 cut(s)	133, 228, 448, 470
Hpy188I	TCNGA	4 cut(s)	121, 206, 383, 537
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	4 cut(s)	133, 228, 448, 470
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4V	TGCA	2 cut(s)	404, 562
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 215, 303
Hsp92II	CATG	5 cut(s)	127, 226, 260, 353, 509
KroI	GCCGGC	1 cut(s)	22
KroNI	GCCGGC	1 cut(s)	24
KspAI	GTTAAC	1 cut(s)	133
KspI	CCGCGG	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	247, 427
LguI	GCTCTTC	1 cut(s)	313
LmnI	GCTCC	5 cut(s)	34, 142, 166, 206, 494
Lsp1109I	GCAGC	1 cut(s)	38
MaeIII	GTNAC	5 cut(s)	34, 52, 170, 458, 577
MalI	GATC	2 cut(s)	249, 429
MboI	GATC	2 cut(s)	247, 427
MboII	GAAGA	3 cut(s)	90, 300, 407
MfeI	CAATTG	1 cut(s)	489
MhlI	GDGCHC	3 cut(s)	16, 308, 499
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	1 cut(s)	489
MluNI	TGGCCA	1 cut(s)	197
MlyI	GAGTC	4 cut(s)	49, 207, 284, 339
MnlI	CCTC	5 cut(s)	88, 91, 170, 253, 273
Mox20I	TGGCCA	1 cut(s)	197
MroNI	GCCGGC	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	4 cut(s)	132, 386, 531, 540
MslI	CAYNNNNRTG	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	3 cut(s)	23, 39, 164
MspR9I	CCNGG	1 cut(s)	64
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	11, 215, 303
NaeI	GCCGGC	1 cut(s)	24
NdeII	GATC	2 cut(s)	247, 427
NgoMIV	GCCGGC	1 cut(s)	22
NlaIII	CATG	5 cut(s)	127, 226, 260, 353, 509
NlaIV	GGNNCC	2 cut(s)	329, 485
NmuCI	GTSAC	2 cut(s)	52, 577
NspI	RCATGY	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	313
PdiI	GCCGGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	511
PflMI	CCANNNNNTGG	2 cut(s)	262, 506
PinAI	ACCGGT	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	28, 296
PleI	GAGTC	4 cut(s)	49, 207, 283, 339
PpsI	GAGTC	4 cut(s)	49, 207, 283, 339
PshBI	ATTAAT	2 cut(s)	386, 531
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	329, 485
PspPI	GGNCC	2 cut(s)	75, 179
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	338
SacII	CCGCGG	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	313
SaqAI	TTAA	4 cut(s)	132, 386, 531, 540
SatI	GCNGC	2 cut(s)	27, 295
Sau3AI	GATC	2 cut(s)	247, 427
Sau96I	GGNCC	2 cut(s)	75, 179
SchI	GAGTC	4 cut(s)	49, 207, 284, 339
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	3 cut(s)	16, 308, 499
SetI	ASST	9 cut(s)	31, 160, 181, 189, 211, 243, 264, 399, 546
SfcI	CTRYAG	1 cut(s)	367
Sfr303I	CCGCGG	1 cut(s)	234
SgrBI	CCGCGG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	75, 179
SmiMI	CAYNNNNRTG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	489
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	3 cut(s)	231, 233, 294
StuI	AGGCCT	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	278
TasI	AATT	1 cut(s)	489
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	4 cut(s)	132, 386, 531, 540
Tru9I	TTAA	4 cut(s)	132, 386, 531, 540
TseFI	GTSAC	2 cut(s)	52, 577
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	2 cut(s)	52, 577
TspDTI	ATGAA	2 cut(s)	277, 404
Van91I	CCANNNNNTGG	2 cut(s)	262, 506
VpaK11BI	GGWCC	2 cut(s)	75, 179
VspI	ATTAAT	2 cut(s)	386, 531
XceI	RCATGY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.