Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0029458

Physical Location & Seq

Genomic Coordinates Forward (+)

18288998 .. 18289447

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGATATGCAAATTTGTGGTTCGTGCTTCTGATGCATCGATTACAAAGGAGATAGGATCAGATCTACAGGGCTGGTTGGATGACCTCACAGATGGGGGTGTTGAGTACATGCCTGAAGACGAAGTGAAGGTGGCGGCTGCCGAGAGGCTTAGGATCTCGATGGAACGGATAGCTTTGCTAAAGGCAGCCCAACCTAAGAAAAAGATTCCGAAATCTGATGATGACGACGACGAAGAAGAAGAAGAGGACGACGAAAGCGATGAAGGCGAGGAGGATAAAATGAAGAAAAAGAAGGAAAAGAAAAAAGATGGCGAGGAAAATGGGAAACCAAAGGGACCTACAACCCTGTCAAAGTTGACAGCAGAGGAGGCTGAACACCGTGCTCTTCAAACAGCAGTGCTTCAAGAGTGGCATGTGTTGTGTAAGGATAGAAGTGCTAAAGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.76

Weight (kDa)

4.76

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029458)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g15790
rosa_multiflora	Rmu_co8241125.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	134
AclWI	GGATC	2 cut(s)	64, 161
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	389, 404
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw21I	GWGCWC	1 cut(s)	385
AlwI	GGATC	2 cut(s)	64, 161
ApeKI	GCWGC	2 cut(s)	137, 185
ApoI	RAATTY	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	2 cut(s)	124, 197
BccI	CCATC	3 cut(s)	86, 154, 302
BfmI	CTRYAG	1 cut(s)	65
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	3 cut(s)	135, 138, 186
BlsI	GCNGC	3 cut(s)	136, 139, 187
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	336
BmsI	GCATC	2 cut(s)	22, 44
BpiI	GAAGAC	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	38
BseGI	GGATG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	284, 380
BseXI	GCAGC	2 cut(s)	124, 197
BshVI	ATCGAT	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	385
BslFI	GGGAC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	3 cut(s)	56, 61, 153
BspACI	CCGC	1 cut(s)	134
BspDI	ATCGAT	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	336
BspPI	GGATC	2 cut(s)	64, 161
BspQI	GCTCTTC	1 cut(s)	390
BssMI	GATC	3 cut(s)	56, 61, 153
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	2 cut(s)	237, 390
BstDEI	CTNAG	2 cut(s)	149, 195
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	3 cut(s)	59, 64, 156
BstMBI	GATC	3 cut(s)	56, 61, 153
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 264, 368
BstNSI	RCATGY	2 cut(s)	112, 416
BstSFI	CTRYAG	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	124, 197
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	2 cut(s)	61, 153
BstYI	RGATCY	2 cut(s)	61, 153
Bsu15I	ATCGAT	1 cut(s)	38
BsuTUI	ATCGAT	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	335
ClaI	ATCGAT	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	2 cut(s)	109, 413
CviJI	RGCY	6 cut(s)	72, 137, 148, 173, 188, 371
CviKI_1	RGCY	6 cut(s)	72, 137, 148, 173, 188, 371
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	2 cut(s)	149, 195
DpnI	GATC	3 cut(s)	58, 63, 155
DpnII	GATC	3 cut(s)	56, 61, 153
Eam1104I	CTCTTC	2 cut(s)	237, 390
EarI	CTCTTC	2 cut(s)	237, 390
Eco47I	GGWCC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	335
EcoT22I	ATGCAT	1 cut(s)	37
FaeI	CATG	2 cut(s)	112, 416
FaiI	YATR	3 cut(s)	7, 110, 414
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	2 cut(s)	108, 412
Fnu4HI	GCNGC	3 cut(s)	135, 138, 186
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	135, 138, 186
GluI	GCNGC	3 cut(s)	135, 138, 186
Hin1II	CATG	2 cut(s)	112, 416
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	4 cut(s)	31, 61, 210, 217
Hpy188III	TCNNGA	2 cut(s)	157, 404
Hpy8I	GTNNAC	1 cut(s)	357
Hpy99I	CGWCG	3 cut(s)	230, 233, 254
HpyAV	CCTTC	3 cut(s)	121, 257, 286
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4V	TGCA	2 cut(s)	9, 35
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 264, 368
HpyF3I	CTNAG	2 cut(s)	149, 195
Hsp92II	CATG	2 cut(s)	112, 416
Kzo9I	GATC	3 cut(s)	56, 61, 153
LguI	GCTCTTC	1 cut(s)	390
LpnPI	CCDG	4 cut(s)	53, 58, 126, 359
Lsp1109I	GCAGC	2 cut(s)	124, 197
LweI	GCATC	2 cut(s)	22, 44
MalI	GATC	3 cut(s)	58, 63, 155
MboI	GATC	3 cut(s)	56, 61, 153
MboII	GAAGA	7 cut(s)	128, 245, 248, 251, 254, 295, 377
MflI	RGATCY	2 cut(s)	61, 153
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	2 cut(s)	11, 445
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	8 cut(s)	95, 138, 238, 262, 265, 307, 358, 361
Mph1103I	ATGCAT	1 cut(s)	37
MseI	TTAA	1 cut(s)	444
MwoI	GCNNNNNNNGC	3 cut(s)	32, 264, 368
NdeII	GATC	3 cut(s)	56, 61, 153
NlaIII	CATG	2 cut(s)	112, 416
NlaIV	GGNNCC	1 cut(s)	336
NmeAIII	GCCGAG	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	37
NspI	RCATGY	2 cut(s)	112, 416
PciSI	GCTCTTC	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	136, 139, 187
PpuMI	RGGWCCY	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	335
PspPPI	RGGWCCY	1 cut(s)	335
PsuI	RGATCY	2 cut(s)	61, 153
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	3 cut(s)	135, 138, 186
Sau3AI	GATC	3 cut(s)	56, 61, 153
Sau96I	GGNCC	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	5 cut(s)	87, 132, 175, 196, 340
SfaNI	GCATC	2 cut(s)	22, 44
SfcI	CTRYAG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	335
Sse9I	AATT	2 cut(s)	11, 445
SsiI	CCGC	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	380
TaqI	TCGA	2 cut(s)	38, 158
TasI	AATT	2 cut(s)	11, 445
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	402
TseI	GCWGC	2 cut(s)	137, 185
TspDTI	ATGAA	2 cut(s)	276, 296
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	402
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	2 cut(s)	112, 416
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.