Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8241125.1

Orthogroup ID

OG0029458

Physical Location & Seq

Genomic Coordinates Forward (+)

229 .. 729

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8241125.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgatgatctttggagctagtgaagtgagccggaatgtcgaccttggtgatgagactacgaccatgatttgcaaatttgttgttcgagcttctgatgcatcaattacgaaggagattggatcagatctacagggctggttggatgatctcactgatgggggtgttgagtacatgcctgaagatgaagtgaaggtggctgctgctgagaggcttaggatctcaatggaacgaatagcattgctaaaggcagccgaacctaaaaagactcccaaatctgatgacgaggacgaagaagaagaagacagtgatgatgaagatgactttatgacaaagaaaaagaaggaaaagaaaaaagatggtgaggaggaagatggcaagaaaaagggacctacaaccttgtccaaattgactgcagaggaggctgaacaccgtgctcttcaacaagcagtgctccaagagtggtatacattgtgtaaagatagagctgcaaaagtaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.64

Weight (kDa)

4.59

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029458)

Species	Orthologous Gene IDs
pyrus_communis	pycom14g15790
rosa_multiflora	Rmu_co8241125.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	39, 464
AclWI	GGATC	2 cut(s)	127, 224
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	440
AluBI	AGCT	3 cut(s)	17, 89, 485
AluI	AGCT	3 cut(s)	17, 89, 485
Alw21I	GWGCWC	2 cut(s)	436, 453
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	127, 224
ApeKI	GCWGC	4 cut(s)	197, 200, 248, 485
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	2 cut(s)	59, 371
AvaII	GGWCC	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	436, 453
BbvI	GCAGC	4 cut(s)	184, 187, 260, 472
BccI	CCATC	3 cut(s)	149, 350, 365
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	2 cut(s)	128, 411
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	4 cut(s)	198, 201, 249, 486
BlsI	GCNGC	4 cut(s)	199, 202, 250, 487
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	387
BmsI	GCATC	2 cut(s)	85, 107
BpiI	GAAGAC	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	2 cut(s)	377, 431
BseXI	GCAGC	4 cut(s)	184, 187, 260, 472
BsiHKAI	GWGCWC	2 cut(s)	436, 453
BsiSI	CCGG	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	399
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	399
Bsp1286I	GDGCHC	2 cut(s)	436, 453
Bsp143I	GATC	5 cut(s)	6, 119, 124, 145, 216
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	387
BspMAI	CTGCAG	1 cut(s)	415
BspPI	GGATC	2 cut(s)	127, 224
BspQI	GCTCTTC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	5 cut(s)	6, 119, 124, 145, 216
BssNAI	GTATAC	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	43
Bst1107I	GTATAC	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	305, 431
Bst6I	CTCTTC	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	204, 212
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	5 cut(s)	9, 122, 127, 148, 219
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	5 cut(s)	6, 119, 124, 145, 216
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 419
BstNSI	RCATGY	1 cut(s)	175
BstSFI	CTRYAG	2 cut(s)	128, 411
BstV1I	GCAGC	4 cut(s)	184, 187, 260, 472
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	2 cut(s)	124, 216
BstYI	RGATCY	2 cut(s)	124, 216
BstZ17I	GTATAC	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	3 cut(s)	150, 310, 453
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	2 cut(s)	64, 172
CviJI	RGCY	9 cut(s)	17, 30, 89, 135, 197, 211, 251, 422, 485
CviKI_1	RGCY	9 cut(s)	17, 30, 89, 135, 197, 211, 251, 422, 485
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	2 cut(s)	204, 212
DpnI	GATC	5 cut(s)	8, 121, 126, 147, 218
DpnII	GATC	5 cut(s)	6, 119, 124, 145, 216
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	2 cut(s)	67, 175
FaiI	YATR	4 cut(s)	65, 173, 326, 465
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	2 cut(s)	63, 171
FblI	GTMKAC	2 cut(s)	39, 464
Fnu4HI	GCNGC	4 cut(s)	198, 201, 249, 486
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	4 cut(s)	198, 201, 249, 486
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	4 cut(s)	198, 201, 249, 486
HapII	CCGG	1 cut(s)	31
Hin1II	CATG	2 cut(s)	67, 175
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	2 cut(s)	59, 371
Hpy166II	GTNNAC	2 cut(s)	40, 465
Hpy188I	TCNGA	3 cut(s)	94, 124, 277
Hpy8I	GTNNAC	2 cut(s)	40, 465
HpyAV	CCTTC	3 cut(s)	103, 184, 334
HpyCH4III	ACNGT	2 cut(s)	305, 431
HpyCH4V	TGCA	4 cut(s)	72, 98, 413, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 419
HpyF3I	CTNAG	2 cut(s)	204, 212
Hsp92II	CATG	2 cut(s)	67, 175
Kzo9I	GATC	5 cut(s)	6, 119, 124, 145, 216
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	2 cut(s)	14, 456
LpnPI	CCDG	4 cut(s)	44, 116, 121, 189
Lsp1109I	GCAGC	4 cut(s)	184, 187, 260, 472
LweI	GCATC	2 cut(s)	85, 107
MaeI	CTAG	1 cut(s)	18
MalI	GATC	5 cut(s)	8, 121, 126, 147, 218
MboI	GATC	5 cut(s)	6, 119, 124, 145, 216
MboII	GAAGA	8 cut(s)	191, 302, 305, 308, 311, 326, 380, 428
MflI	RGATCY	2 cut(s)	124, 216
MhlI	GDGCHC	2 cut(s)	436, 453
MluCI	AATT	4 cut(s)	74, 102, 404, 496
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	6 cut(s)	201, 277, 355, 358, 409, 412
Mph1103I	ATGCAT	1 cut(s)	100
MspI	CCGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	95, 419
NdeII	GATC	5 cut(s)	6, 119, 124, 145, 216
NlaIII	CATG	2 cut(s)	67, 175
NlaIV	GGNNCC	1 cut(s)	387
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	441
PkrI	GCNGC	4 cut(s)	199, 202, 250, 487
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	386
Psp5II	RGGWCCY	1 cut(s)	386
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	386
PspPPI	RGGWCCY	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	124, 216
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SalI	GTCGAC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	441
SatI	GCNGC	4 cut(s)	198, 201, 249, 486
Sau3AI	GATC	5 cut(s)	6, 119, 124, 145, 216
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	1 cut(s)	259
SduI	GDGCHC	2 cut(s)	436, 453
SetI	ASST	8 cut(s)	19, 45, 91, 195, 259, 391, 398, 487
SfaNI	GCATC	2 cut(s)	85, 107
SfcI	CTRYAG	2 cut(s)	128, 411
SinI	GGWCC	1 cut(s)	386
Sse9I	AATT	4 cut(s)	74, 102, 404, 496
SspMI	CTAG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	2 cut(s)	305, 431
TaqI	TCGA	2 cut(s)	39, 85
TasI	AATT	4 cut(s)	74, 102, 404, 496
TatI	WGTACW	1 cut(s)	168
TscAI	CASTG	3 cut(s)	157, 310, 453
TseI	GCWGC	4 cut(s)	197, 200, 248, 485
TspDTI	ATGAA	2 cut(s)	198, 327
TspRI	CASTG	3 cut(s)	157, 310, 453
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	175
XmiI	GTMKAC	2 cut(s)	39, 464
XspI	CTAG	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.