Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0028561

Physical Location & Seq

Genomic Coordinates Forward (+)

20539284 .. 20539526

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGAAATGGGACGTCCCGCTTGAAGGAAAGCACAGGAAGCTGCAGTTTGTGAACAAACTTTGGCAAGATCCCCATGATCCCAGGCACATTCAGGAGAGTGCTGAAATAGTTGCAAAGCTTGTTGGCTTCTGCGGAAGCGGAAACCTGTCGAGAGAGATGTTTGAGCTCAATTTTGTGCTCCCATCTGATAGGAGGCCATGGATGATGGGCTGGAACCAGATTTCCAACCTTCTCAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0007349 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022607 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048229 GO:0048285 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140014 GO:1902410 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

81

Amino Acids

9.43

Weight (kDa)

7.96

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3490	PF11995	1 - 60	1.9e-22	Domain of unknown function (DUF3490)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0028561)

Species	Orthologous Gene IDs
malus_domestica	MD02G1102100.v1.1
pyrus_communis	pycom14g19080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	15
AciI	CCGC	3 cut(s)	17, 132, 138
AclWI	GGATC	2 cut(s)	62, 71
AcyI	GRCGYC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	80
AloI	GAACNNNNNNTCC	2 cut(s)	206, 238
AluBI	AGCT	3 cut(s)	40, 118, 166
AluI	AGCT	3 cut(s)	40, 118, 166
Alw21I	GWGCWC	2 cut(s)	168, 180
AlwI	GGATC	2 cut(s)	62, 71
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	168, 180
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	2 cut(s)	190, 199
BciT130I	CCWGG	1 cut(s)	82
BfmI	CTRYAG	1 cut(s)	41
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	80, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	2 cut(s)	80, 197
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	27
BshFI	GGCC	1 cut(s)	196
BsiHKAI	GWGCWC	2 cut(s)	168, 180
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	168, 180
Bsp143I	GATC	2 cut(s)	67, 76
Bsp19I	CCATGG	1 cut(s)	197
BspACI	CCGC	3 cut(s)	17, 132, 138
BspANI	GGCC	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	215
BspMAI	CTGCAG	1 cut(s)	45
BspPI	GGATC	2 cut(s)	62, 71
BssECI	CCNNGG	2 cut(s)	80, 197
BssMI	GATC	2 cut(s)	67, 76
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	70, 79
BstMBI	GATC	2 cut(s)	67, 76
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	207
CviAII	CATG	2 cut(s)	74, 198
CviJI	RGCY	6 cut(s)	40, 118, 126, 166, 196, 210
CviKI_1	RGCY	6 cut(s)	40, 118, 126, 166, 196, 210
DpnI	GATC	2 cut(s)	69, 78
DpnII	GATC	2 cut(s)	67, 76
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	2 cut(s)	77, 201
FaiI	YATR	2 cut(s)	75, 199
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	73, 197
FauI	CCCGC	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	1 cut(s)	214
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	41
GluI	GCNGC	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	77, 201
HindIII	AAGCTT	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	92, 150
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	17, 239
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	2 cut(s)	43, 113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	77, 201
Kzo9I	GATC	2 cut(s)	67, 76
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	7 cut(s)	19, 67, 77, 94, 158, 196, 230
Lsp1109I	GCAGC	1 cut(s)	27
MaeII	ACGT	1 cut(s)	12
MalI	GATC	2 cut(s)	69, 78
MboI	GATC	2 cut(s)	67, 76
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	2 cut(s)	168, 180
MluCI	AATT	2 cut(s)	169, 235
MnlI	CCTC	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	197
NdeII	GATC	2 cut(s)	67, 76
NlaIII	CATG	2 cut(s)	77, 201
NlaIV	GGNNCC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	168
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	67, 76
ScrFI	CCNGG	1 cut(s)	82
SduI	GDGCHC	2 cut(s)	168, 180
SetI	ASST	6 cut(s)	15, 42, 120, 147, 168, 231
SfcI	CTRYAG	1 cut(s)	41
Sse9I	AATT	2 cut(s)	169, 235
SsiI	CCGC	3 cut(s)	17, 132, 138
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	197
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	149
TasI	AATT	2 cut(s)	169, 235
TseI	GCWGC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	17
ZraI	GACGTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.